Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- plastid 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G61960.1 | KRH00387 | AT3G08850.1 | 15720729 |
| AT5G61960.1 | KRH40797 | AT3G08850.1 | 15720729 |
| AT5G61960.1 | KRH40804 | AT3G08850.1 | 15720729 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH63864 | Soybean | nucleus | 93.28 | 92.89 |
| KRH41056 | Soybean | nucleus | 73.42 | 74.42 |
| KRH59735 | Soybean | nucleus | 72.29 | 73.73 |
| VIT_17s0000g00240.t01 | Wine grape | nucleus | 55.74 | 54.01 |
| AT5G61960.1 | Thale cress | nucleus | 44.16 | 46.67 |
| CDX98985 | Canola | nucleus | 42.61 | 46.55 |
| CDY30687 | Canola | nucleus | 41.16 | 46.55 |
| Bra009274.1-P | Field mustard | nucleus | 42.4 | 46.33 |
| Bra029297.1-P | Field mustard | nucleus | 42.71 | 46.3 |
| CDX70025 | Canola | nucleus | 42.4 | 46.17 |
| AT5G07290.1 | Thale cress | nucleus | 43.23 | 46.09 |
| Bra010044.1-P | Field mustard | nucleus | 43.33 | 45.74 |
| CDY30686 | Canola | nucleus | 25.03 | 45.66 |
| CDY00238 | Canola | nucleus | 42.09 | 44.53 |
| CDX86947 | Canola | nucleus | 41.78 | 44.44 |
| KRH45198 | Soybean | nucleus | 32.37 | 42.41 |
| CDY72437 | Canola | nucleus | 10.96 | 42.23 |
| KRH12823 | Soybean | nucleus | 35.06 | 39.33 |
| KRG98918 | Soybean | plastid | 34.75 | 39.21 |
| KRH46056 | Soybean | nucleus, plastid | 34.64 | 39.14 |
| KRH37781 | Soybean | nucleus | 34.64 | 38.86 |
| HORVU1Hr1G000530.2 | Barley | nucleus | 23.47 | 38.28 |
| Os05t0102800-01 | Rice | nucleus | 36.4 | 36.86 |
| TraesCS1B01G008000.1 | Wheat | nucleus | 35.06 | 36.22 |
| Zm00001d035763_P003 | Maize | plastid | 35.37 | 36.08 |
| TraesCS1D01G002500.1 | Wheat | nucleus | 34.95 | 36.0 |
| OQU77194 | Sorghum | plastid | 29.68 | 35.09 |
| TraesCS1A01G005800.2 | Wheat | nucleus | 34.54 | 34.47 |
| KRH31364 | Soybean | cytosol, nucleus | 5.89 | 32.95 |
| KRG97510 | Soybean | nucleus | 14.06 | 25.23 |
| KRH16604 | Soybean | cytosol, nucleus, peroxisome | 6.72 | 23.9 |
| KRH31365 | Soybean | nucleus | 7.45 | 22.15 |
| KRH18810 | Soybean | cytosol | 6.0 | 21.56 |
| KRH24390 | Soybean | nucleus | 6.31 | 17.28 |
| KRH29371 | Soybean | nucleus | 6.31 | 16.58 |
Protein Annotations
| EntrezGene:100801025 | Gene3D:3.30.70.330 | MapMan:35.1 | EMBL:ACUP02003492 | EnsemblPlantsGene:GLYMA_06G164300 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 | InterPro:IPR000504 | InterPro:IPR012677 | UniProt:K7KVF7 |
| EnsemblPlants:KRH54096 | ProteinID:KRH54096 | ProteinID:KRH54096.1 | ProteinID:KRH54097.1 | ProteinID:KRH54098.1 | InterPro:MEI2-like_RRM3 |
| InterPro:MEI2_like_RRM1 | InterPro:Mei2-like_Rrm_C | InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 | PFAM:PF04059 | PFscan:PS50102 |
| PANTHER:PTHR44127 | PANTHER:PTHR44127:SF6 | InterPro:RBD_domain_sf | InterPro:RRM_dom | SMART:SM00360 | SUPFAM:SSF54928 |
| UniParc:UPI000294CDC4 | SEG:seg | : | : | : | : |
Description
hypothetical protein
Coordinates
chr6:-:13578113..13584925
Molecular Weight (calculated)
106037.0 Da
IEP (calculated)
6.917
GRAVY (calculated)
-0.526
Length
967 amino acids
Sequence
(BLAST)
(BLAST)
001: MPSEIMEKRG ASASSRFLDD ISYVSEKNTG LRKPKSIHDH FLQGKSEMAA SPGIIFNTSS PLETNSKTGL SISQTTLSRE ITEDLHFGRE TGNTDMLKDS
101: TTESLNYHKR SWSNVYRQSA SGSYGLIGSK IVTNAASRES SLFSSSLSDM FSQKLRLLGN GVLSGQPITV GSFPEEEPYK SLEEIEAETI GNLLPDEDDL
201: FSGVTDELGF STGTRMNDDF EDFDLFSSSG GMELEGDEHL ISGKRTSCGD EDPNYFGVSK GKIPFGEKSS RTLFVRNINS NVEDSELKAL FEQYGDIRTI
301: YTACKYRGFV MISYYDLRAA QNAMKALQNR SLRSRKLDIH YSIPKGNAPE KDIGHGTLMI SDLDSSVLND ELKQIFGFYG EIREIYEYPQ LNHVKFIEFY
401: DVRAAEASLR ALNGICFAGK HIKLEPGLPK IATCMMQQSQ KGKDEPDFGH SLSDNISLRH NKAGVSSGFI ASGVSLENGY NQGFRSETQL PAFMDNSLFH
501: VNSSIHKTTR GASAGKVSGV FEACNAIDAM KFASISRFHP HSLPEYRESL ANGSPYNFSS TINMAANIGT GSTESSDSRH IQGMSSTGNL AEFNAAGNGN
601: RPHHGLYHMW NGSNLHQQPP SNSMLWQKIP SFVNGACSPG LPQIPSFSRT PPHVLRASHI DHQVGSAPVV AASPWDRQHS FLGESPDASG FRLGSVGSPG
701: FHGSWQLHPP ASHNIFSHVG GNGTELTSNG GQGSPKQLSH VLPGRLPMTL VSKNLYSRRS EPNTNNNADK KQYVLDLGRI LRGDDNRTTL MIKNIPNKYT
801: SKMLLVAIDE QCRGTYDFLY LPIDFKNKCN VGYAFINMID PGQIIPFHQA FHGKKWEKFN SEKVAVLAYA RIQGKSALIA HFQNSSLMNE DKRCRPILFH
901: TDGPNAGDPE PFPLGNNIRV RPGKIRMNGN EENGSQGNPS SLASGEESGN GTESTSSSSK VLTDLAS
101: TTESLNYHKR SWSNVYRQSA SGSYGLIGSK IVTNAASRES SLFSSSLSDM FSQKLRLLGN GVLSGQPITV GSFPEEEPYK SLEEIEAETI GNLLPDEDDL
201: FSGVTDELGF STGTRMNDDF EDFDLFSSSG GMELEGDEHL ISGKRTSCGD EDPNYFGVSK GKIPFGEKSS RTLFVRNINS NVEDSELKAL FEQYGDIRTI
301: YTACKYRGFV MISYYDLRAA QNAMKALQNR SLRSRKLDIH YSIPKGNAPE KDIGHGTLMI SDLDSSVLND ELKQIFGFYG EIREIYEYPQ LNHVKFIEFY
401: DVRAAEASLR ALNGICFAGK HIKLEPGLPK IATCMMQQSQ KGKDEPDFGH SLSDNISLRH NKAGVSSGFI ASGVSLENGY NQGFRSETQL PAFMDNSLFH
501: VNSSIHKTTR GASAGKVSGV FEACNAIDAM KFASISRFHP HSLPEYRESL ANGSPYNFSS TINMAANIGT GSTESSDSRH IQGMSSTGNL AEFNAAGNGN
601: RPHHGLYHMW NGSNLHQQPP SNSMLWQKIP SFVNGACSPG LPQIPSFSRT PPHVLRASHI DHQVGSAPVV AASPWDRQHS FLGESPDASG FRLGSVGSPG
701: FHGSWQLHPP ASHNIFSHVG GNGTELTSNG GQGSPKQLSH VLPGRLPMTL VSKNLYSRRS EPNTNNNADK KQYVLDLGRI LRGDDNRTTL MIKNIPNKYT
801: SKMLLVAIDE QCRGTYDFLY LPIDFKNKCN VGYAFINMID PGQIIPFHQA FHGKKWEKFN SEKVAVLAYA RIQGKSALIA HFQNSSLMNE DKRCRPILFH
901: TDGPNAGDPE PFPLGNNIRV RPGKIRMNGN EENGSQGNPS SLASGEESGN GTESTSSSSK VLTDLAS
001: MPSDILEPRG VPTPSHFHED IRITPEKQFG FMKNNPMPEG GVDRSSNLPT SSWTSDSYQL SQQSSLSGAL PSFIPNGRTT TNDTHWESSL FSSSLSDLFS
101: RKLRLPRSDK LAFMSANREE EPSESLEEME AQTIGNLLPD EDDLFAEVVG EGVHKSRANG GDDLDDCDLF SSVGGMELDG DVFSSVSQRD GKRGSNVSTV
201: AEHPQGEILS RILFVRNVDS SIEDCELGVL FKQFGDVRAL HTAGKNRGFI MVSYYDIRAA QKAARALHGR LLRGRKLDIR YSIPKENPKE NSSEGALWVN
301: NLDSSISNEE LHGIFSSYGE IREVRRTMHE NSQVYIEFFD VRKAKVALQG LNGLEVAGRQ LKLAPTCPEG TSFWPQFASD DGEGGLPKMA FNNLSSAHMG
401: RHFPGILAST SIDGGSIRGM HNSVGSPMNS FIERHQSLDV PIGLPPSARV ISASKPVGLQ EFGNPFDNSK TGIQSMPNLH PHFPDYLDNF ASGSPYKSST
501: TFSEMVSDGQ KANEGFMMSN VRGVGVDGFN GGVIGSPINQ GSHRGNLNLW SNSNSQQHNQ SSGMMWPNSP SRVNGVPSQR IPPVTAFSRA SPLMVNMASS
601: PVHHHIGSAP VLNSPFWDRR QAYVAESPES SGFHLGSPGS MGFPGSSPSH PMDFGSHKVF SHVGGNRMEA NSKNAVLRSS RQMPHLFTGR SPMLSVSGSF
701: DLPNERYRNL SHRRSESNSS NAEKKLYELD VDRILRGEDS RTTLMIKNIP NKYTSKMLLA AIDEYCKGTY DFLYLPIDFK NKCNVGYAFI NLIEPENIVP
801: FYKAFNGKKW EKFNSEKVAS LAYGRIQGKS ALIAHFQNSS LMNEDKRCRP ILFHTAGPNA GDQEPFPMGS NIRSRPGKHR TNSIENYTNF SSSSDNRDEP
901: ANGNDSM
101: RKLRLPRSDK LAFMSANREE EPSESLEEME AQTIGNLLPD EDDLFAEVVG EGVHKSRANG GDDLDDCDLF SSVGGMELDG DVFSSVSQRD GKRGSNVSTV
201: AEHPQGEILS RILFVRNVDS SIEDCELGVL FKQFGDVRAL HTAGKNRGFI MVSYYDIRAA QKAARALHGR LLRGRKLDIR YSIPKENPKE NSSEGALWVN
301: NLDSSISNEE LHGIFSSYGE IREVRRTMHE NSQVYIEFFD VRKAKVALQG LNGLEVAGRQ LKLAPTCPEG TSFWPQFASD DGEGGLPKMA FNNLSSAHMG
401: RHFPGILAST SIDGGSIRGM HNSVGSPMNS FIERHQSLDV PIGLPPSARV ISASKPVGLQ EFGNPFDNSK TGIQSMPNLH PHFPDYLDNF ASGSPYKSST
501: TFSEMVSDGQ KANEGFMMSN VRGVGVDGFN GGVIGSPINQ GSHRGNLNLW SNSNSQQHNQ SSGMMWPNSP SRVNGVPSQR IPPVTAFSRA SPLMVNMASS
601: PVHHHIGSAP VLNSPFWDRR QAYVAESPES SGFHLGSPGS MGFPGSSPSH PMDFGSHKVF SHVGGNRMEA NSKNAVLRSS RQMPHLFTGR SPMLSVSGSF
701: DLPNERYRNL SHRRSESNSS NAEKKLYELD VDRILRGEDS RTTLMIKNIP NKYTSKMLLA AIDEYCKGTY DFLYLPIDFK NKCNVGYAFI NLIEPENIVP
801: FYKAFNGKKW EKFNSEKVAS LAYGRIQGKS ALIAHFQNSS LMNEDKRCRP ILFHTAGPNA GDQEPFPMGS NIRSRPGKHR TNSIENYTNF SSSSDNRDEP
901: ANGNDSM
Arabidopsis Description
ML4Protein MEI2-like 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9LYN7]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.