Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- mitochondrion 2
- nucleus 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| TraesCS5A01G149200.2 | |
| TraesCS5B01G147900.4 | |
| TraesCS5D01G143600.3 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G61960.1 | TraesCS5A01G149200.2 | AT3G08850.1 | 15720729 |
| AT5G61960.1 | TraesCS5B01G147900.4 | AT3G08850.1 | 15720729 |
| AT5G61960.1 | TraesCS5D01G143600.3 | AT3G08850.1 | 15720729 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1B01G008000.1 | Wheat | nucleus | 95.95 | 96.26 |
| TraesCS1A01G005800.2 | Wheat | nucleus | 96.7 | 93.7 |
| HORVU1Hr1G000530.2 | Barley | nucleus | 58.57 | 92.75 |
| Os05t0102800-01 | Rice | nucleus | 68.37 | 67.23 |
| OQU77194 | Sorghum | plastid | 55.7 | 63.94 |
| Zm00001d035763_P003 | Maize | plastid | 63.37 | 62.76 |
| VIT_00s0239g00110.t01 | Wine grape | plastid | 6.18 | 52.73 |
| VIT_01s0150g00090.t01 | Wine grape | nucleus | 43.24 | 41.01 |
| VIT_17s0000g00240.t01 | Wine grape | nucleus | 42.7 | 40.18 |
| TraesCS2D01G286200.6 | Wheat | nucleus | 38.87 | 39.5 |
| PGSC0003DMT400005752 | Potato | nucleus | 39.4 | 37.91 |
| CDY30686 | Canola | nucleus | 21.3 | 37.74 |
| KRH59735 | Soybean | nucleus | 38.02 | 37.66 |
| Solyc05g023740.2.1 | Tomato | nucleus | 38.98 | 37.65 |
| KRH41056 | Soybean | nucleus | 38.02 | 37.42 |
| Bra010044.1-P | Field mustard | nucleus | 35.68 | 36.57 |
| Bra029297.1-P | Field mustard | nucleus | 34.61 | 36.44 |
| AT5G61960.1 | Thale cress | nucleus | 35.36 | 36.28 |
| CDX98985 | Canola | nucleus | 34.19 | 36.27 |
| CDY30687 | Canola | nucleus | 33.01 | 36.26 |
| Bra009274.1-P | Field mustard | nucleus | 34.08 | 36.16 |
| CDX70025 | Canola | nucleus | 34.08 | 36.04 |
| KRH45198 | Soybean | nucleus | 28.11 | 35.77 |
| CDX86947 | Canola | nucleus | 34.61 | 35.75 |
| CDY00238 | Canola | nucleus | 34.61 | 35.56 |
| KRH63864 | Soybean | nucleus | 36.63 | 35.43 |
| AT5G07290.1 | Thale cress | nucleus | 34.19 | 35.39 |
| KRH54096 | Soybean | nucleus | 36.0 | 34.95 |
| TraesCS7D01G003000.1 | Wheat | plastid | 31.74 | 34.25 |
| CDY72437 | Canola | nucleus | 7.45 | 27.89 |
| TraesCS5D01G325300.1 | Wheat | mitochondrion, plasma membrane | 5.75 | 21.51 |
| TraesCS3D01G407900.1 | Wheat | nucleus | 14.16 | 19.47 |
| TraesCS7D01G364300.1 | Wheat | nucleus, plasma membrane, plastid | 6.07 | 17.87 |
| TraesCS5D01G325200.1 | Wheat | cytosol, nucleus, plasma membrane, plastid | 6.18 | 17.42 |
Protein Annotations
| Gene3D:3.30.70.330 | MapMan:35.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 | InterPro:IPR000504 |
| InterPro:IPR012677 | InterPro:MEI2-like_RRM3 | InterPro:MEI2_like_RRM1 | InterPro:Mei2-like_Rrm_C | InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 |
| PFAM:PF04059 | PFAM:PF13893 | PFscan:PS50102 | PANTHER:PTHR44127 | PANTHER:PTHR44127:SF7 | InterPro:RBD_domain_sf |
| InterPro:RRM_dom | SMART:SM00360 | SUPFAM:SSF54928 | EnsemblPlantsGene:TraesCS1D01G002500 | EnsemblPlants:TraesCS1D01G002500.1 | TIGR:cd12524 |
| TIGR:cd12531 | SEG:seg | : | : | : | : |
Description
No Description!
Coordinates
chr1D:-:577573..582806
Molecular Weight (calculated)
101983.0 Da
IEP (calculated)
7.188
GRAVY (calculated)
-0.543
Length
939 amino acids
Sequence
(BLAST)
(BLAST)
001: MVIASGVIDR GHLSSFGGPP PDSTSSSFFS EDLVPTEVGK KRQVGFWKSE SMVDQRGSKP AFASPLEKIH PTGANPEGSL EQTGGQVFKG LDALRLSKAM
101: GQGNASSSPS VSWGDMLTTP GSRFGLSARD AAIAGTASGN SRIMAIGVCG QSADTLSFIC EGDEALGSME EVEAQTIGDL LPTDDDLISG VIDGFELSGL
201: SINQDDADED IFGTGGGMEL ENDDSISIKG ARNLEGSSKC HFPGEHHINK CPSRTLFVTN INTNILDSDL RVLFQQYGDI HKLYTCKEHG YVTVSYYDIR
301: AAQNAMRALH GKPLGLVKLD VQFCIPKGTA SDKDISKGVL VVSNIEPSVS NDDLLQALTV YGDVKEICRA STSCNKKLVE FYDVRAAEAA LYDLNKGAIS
401: GPKIKAEVSN PGGTIFGLRQ QYPREWKLDG SPRQPRNSPP GTIGGPRSHE SSTLHNLFSP VSPQLDRSTH GIASSGPQKL SSPIRIEPTR QYNNQAAISE
501: LGGSLGQGNF GHGMQMFHPH SLPESQNGIC NISKSMTSSG RSAGFRVDGV DYSHLQKVGS GSLHGHSFDQ NNEAFGPAGV GSFPLNGHHY SWNNSNAFPQ
601: SPSSPMLWSN VQHPGHMHGY PGVVPPHTLN NGAYPMDQHH MGSAPNNGGS FRNARSVHPG SLGSVGFPGS PQMYPSDVPV FAPARGSYRE TMFSPVGAGF
701: PSLQQMCNAM NRRNPMVQVS ASYDATNERM RNRRHDGNAV QPENKRLFEL DIERIAKRED PRTTLMIKNI PNKYNCKLLL GVIDENHRGT YDFVYLPIDF
801: KNKCNVGYAF INMTDPQHII PFYKTFNGKR WEKFNSEKVA TLAYARIQGR NELVSHFRNS SLMNEDKWCR PILFHKDGPN AGEQEPFPVG NNIRPRSGRN
901: RPLHSADTRG DASLSTSPNQ ENSSRRANAA EGNDSIFAH
101: GQGNASSSPS VSWGDMLTTP GSRFGLSARD AAIAGTASGN SRIMAIGVCG QSADTLSFIC EGDEALGSME EVEAQTIGDL LPTDDDLISG VIDGFELSGL
201: SINQDDADED IFGTGGGMEL ENDDSISIKG ARNLEGSSKC HFPGEHHINK CPSRTLFVTN INTNILDSDL RVLFQQYGDI HKLYTCKEHG YVTVSYYDIR
301: AAQNAMRALH GKPLGLVKLD VQFCIPKGTA SDKDISKGVL VVSNIEPSVS NDDLLQALTV YGDVKEICRA STSCNKKLVE FYDVRAAEAA LYDLNKGAIS
401: GPKIKAEVSN PGGTIFGLRQ QYPREWKLDG SPRQPRNSPP GTIGGPRSHE SSTLHNLFSP VSPQLDRSTH GIASSGPQKL SSPIRIEPTR QYNNQAAISE
501: LGGSLGQGNF GHGMQMFHPH SLPESQNGIC NISKSMTSSG RSAGFRVDGV DYSHLQKVGS GSLHGHSFDQ NNEAFGPAGV GSFPLNGHHY SWNNSNAFPQ
601: SPSSPMLWSN VQHPGHMHGY PGVVPPHTLN NGAYPMDQHH MGSAPNNGGS FRNARSVHPG SLGSVGFPGS PQMYPSDVPV FAPARGSYRE TMFSPVGAGF
701: PSLQQMCNAM NRRNPMVQVS ASYDATNERM RNRRHDGNAV QPENKRLFEL DIERIAKRED PRTTLMIKNI PNKYNCKLLL GVIDENHRGT YDFVYLPIDF
801: KNKCNVGYAF INMTDPQHII PFYKTFNGKR WEKFNSEKVA TLAYARIQGR NELVSHFRNS SLMNEDKWCR PILFHKDGPN AGEQEPFPVG NNIRPRSGRN
901: RPLHSADTRG DASLSTSPNQ ENSSRRANAA EGNDSIFAH
001: MRGVSTPSHF HEDIHITSER QFGFMKTDMM PENQGGRDRL SSMPKSSWTS ESYQLKPQSS FSGSHPSGSP NARNTTNGSQ WESSLFSSSM SDLFSRKLRL
101: QGSDMLSTMS ANTVVTHREE EPSESLEEIE AQTIGNLLPD EDDLFAEVTG EVGRKSRANT GDELDEFDLF SSVGGMELDG DIFSSVSHRN GERGGNNSVG
201: ELNRGEIPSR TLLVGNISSN VEDYELKVLF EQFGDIQALH TACKNRGFIM VSYCDIRAAQ NAARALQNKL LRGTKLDIRY SISKENPSQK DTSKGALLVN
301: NLDSSISNQE LNRLVKSYGE VKEIRRTMHD NSQIYIEFFD VRAAAAALGG LNGLEVAGKK LQLVPTYPEG TRYTSQCAAN DTEGCLPKTS YSNTSSGHIG
401: RHFPGMISST SSDGGSMRVI HNSIGSPVNS FIERHRSLSI PIGFPPSANG ISASKPVGLQ EHGHHFDNSN MGIQSMPNLH PHSFSEYVDN FANGSPYTSS
501: AFSEMVSDGS KANEGFMIHN VRGVEGFSGG GIGSPMHQSS RRPINLWSNS NTQQQNPSSG MMWPNSPSHI NSIPTQRPPV TVFSRAPPIM VNMASSPVHH
601: HIGSAPVLNS PFWDRRQAYV AESLESSGFH IGSHGSMGIP GSSPSHPMDI GSHKTFSVGG NRMDVNSQNA VLRSPQQLSH LFPGRSPMGS MPGSFDSPNE
701: RYRNLSHRRS ESSSSNADKK LYELDVDRIL RGEDRRTTLM IKNIPNKYTS KMLLSAIDEH CKGTYDFLYL PIDFKNKCNV GYAFINLIEP EKIVPFFKAF
801: NGKKWEKFNS EKVATLTYAR IQGKTALIAH FQNSSLMNED KRCRPILFHT DGPNAGDQEP FPMGSNIRSR PGKPRSSSID NYNSFSISSV SENREETPNG
901: TDPFLKEN
101: QGSDMLSTMS ANTVVTHREE EPSESLEEIE AQTIGNLLPD EDDLFAEVTG EVGRKSRANT GDELDEFDLF SSVGGMELDG DIFSSVSHRN GERGGNNSVG
201: ELNRGEIPSR TLLVGNISSN VEDYELKVLF EQFGDIQALH TACKNRGFIM VSYCDIRAAQ NAARALQNKL LRGTKLDIRY SISKENPSQK DTSKGALLVN
301: NLDSSISNQE LNRLVKSYGE VKEIRRTMHD NSQIYIEFFD VRAAAAALGG LNGLEVAGKK LQLVPTYPEG TRYTSQCAAN DTEGCLPKTS YSNTSSGHIG
401: RHFPGMISST SSDGGSMRVI HNSIGSPVNS FIERHRSLSI PIGFPPSANG ISASKPVGLQ EHGHHFDNSN MGIQSMPNLH PHSFSEYVDN FANGSPYTSS
501: AFSEMVSDGS KANEGFMIHN VRGVEGFSGG GIGSPMHQSS RRPINLWSNS NTQQQNPSSG MMWPNSPSHI NSIPTQRPPV TVFSRAPPIM VNMASSPVHH
601: HIGSAPVLNS PFWDRRQAYV AESLESSGFH IGSHGSMGIP GSSPSHPMDI GSHKTFSVGG NRMDVNSQNA VLRSPQQLSH LFPGRSPMGS MPGSFDSPNE
701: RYRNLSHRRS ESSSSNADKK LYELDVDRIL RGEDRRTTLM IKNIPNKYTS KMLLSAIDEH CKGTYDFLYL PIDFKNKCNV GYAFINLIEP EKIVPFFKAF
801: NGKKWEKFNS EKVATLTYAR IQGKTALIAH FQNSSLMNED KRCRPILFHT DGPNAGDQEP FPMGSNIRSR PGKPRSSSID NYNSFSISSV SENREETPNG
901: TDPFLKEN
Arabidopsis Description
ML1Protein MEI2-like 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8W4I9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.