Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G61960.1 | KRH00387 | AT3G08850.1 | 15720729 |
| AT5G61960.1 | KRH40797 | AT3G08850.1 | 15720729 |
| AT5G61960.1 | KRH40804 | AT3G08850.1 | 15720729 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH54096 | Soybean | nucleus | 92.89 | 93.28 |
| KRH41056 | Soybean | nucleus | 73.64 | 74.95 |
| KRH59735 | Soybean | nucleus | 72.71 | 74.47 |
| VIT_17s0000g00240.t01 | Wine grape | nucleus | 56.44 | 54.91 |
| CDY30687 | Canola | nucleus | 41.81 | 47.49 |
| AT5G61960.1 | Thale cress | nucleus | 44.7 | 47.43 |
| Bra029297.1-P | Field mustard | nucleus | 43.46 | 47.31 |
| AT5G07290.1 | Thale cress | nucleus | 44.08 | 47.19 |
| CDX98985 | Canola | nucleus | 42.95 | 47.12 |
| Bra009274.1-P | Field mustard | nucleus | 42.95 | 47.12 |
| CDX70025 | Canola | nucleus | 42.95 | 46.96 |
| CDY30686 | Canola | nucleus | 25.54 | 46.79 |
| Bra010044.1-P | Field mustard | nucleus | 44.08 | 46.72 |
| CDY00238 | Canola | nucleus | 42.84 | 45.51 |
| CDX86947 | Canola | nucleus | 42.43 | 45.32 |
| CDY72437 | Canola | nucleus | 11.23 | 43.43 |
| KRH45198 | Soybean | nucleus | 32.34 | 42.55 |
| KRG98918 | Soybean | plastid | 35.43 | 40.14 |
| KRH46056 | Soybean | nucleus, plastid | 35.22 | 39.95 |
| HORVU1Hr1G000530.2 | Barley | nucleus | 24.1 | 39.46 |
| KRH12823 | Soybean | nucleus | 35.02 | 39.44 |
| KRH37781 | Soybean | nucleus | 34.71 | 39.1 |
| Os05t0102800-01 | Rice | nucleus | 37.08 | 37.7 |
| Zm00001d035763_P003 | Maize | plastid | 36.05 | 36.92 |
| TraesCS1B01G008000.1 | Wheat | nucleus | 35.43 | 36.75 |
| TraesCS1D01G002500.1 | Wheat | nucleus | 35.43 | 36.63 |
| OQU77194 | Sorghum | plastid | 30.18 | 35.82 |
| TraesCS1A01G005800.2 | Wheat | nucleus | 34.91 | 34.98 |
| KRH31364 | Soybean | cytosol, nucleus | 5.87 | 32.95 |
| KRG97510 | Soybean | nucleus | 14.21 | 25.6 |
| KRH16604 | Soybean | cytosol, nucleus, peroxisome | 6.69 | 23.9 |
| KRH31365 | Soybean | nucleus | 7.52 | 22.46 |
| KRH18810 | Soybean | cytosol | 5.97 | 21.56 |
| KRH24390 | Soybean | nucleus | 6.39 | 17.56 |
| KRH29371 | Soybean | nucleus | 6.28 | 16.58 |
Protein Annotations
| EntrezGene:100797616 | Gene3D:3.30.70.330 | MapMan:35.1 | UniProt:A0A0R0KGZ6 | EMBL:ACUP02002721 | EnsemblPlantsGene:GLYMA_04G201200 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 | InterPro:IPR000504 | InterPro:IPR012677 |
| EnsemblPlants:KRH63864 | ProteinID:KRH63864 | ProteinID:KRH63864.1 | InterPro:MEI2-like_RRM3 | InterPro:MEI2_like_RRM1 | InterPro:Mei2-like_Rrm_C |
| InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 | PFAM:PF04059 | PFscan:PS50102 | PANTHER:PTHR44127 | PANTHER:PTHR44127:SF6 |
| InterPro:RBD_domain_sf | InterPro:RRM_dom | SMART:SM00360 | SUPFAM:SSF54928 | UniParc:UPI0006ED9C3D | SEG:seg |
Description
hypothetical protein
Coordinates
chr4:+:47402788..47411497
Molecular Weight (calculated)
106847.0 Da
IEP (calculated)
6.953
GRAVY (calculated)
-0.567
Length
971 amino acids
Sequence
(BLAST)
(BLAST)
001: MPSEIMEKRG VSASSRFLDD ISYVSEKNTG LRKPKFIHDH FLQGKSEMAA SPGIIFNTSS PHETNAKTGL LMSQTTLSRE ITEDLHFGRE AGNIEMLKDS
101: TTESLNYHKR SWSNVHRQPA SSSYGLVGSK IVTNAASRES SLFSSSLSDM FSQKLRLLGN GVLSGQPITV GSLPEEEPYK SLEEIEAETI GNLLPDEDDL
201: FSGVNDELGC STRTRMNDDF EDFDLFSSSG GMELEGDEHL ISGKRTSCGD EDPDYFGVSK GKIPFGEQSS RTLFVRNINS NVEDSELKAL FEQYGDIRTI
301: YTACKHRGFV MISYYDIRAA QNAMKALQNR SLRSRKLDIH YSIPKGNSPE KDIGHGTLMI SNLDSSVLDD ELKQIFGFYG EIREIYEYPQ LNHVKFIEFY
401: DVRAAEASLR ALNGICFAGK HIKLEPGLPK IATCMMHQSH KGKDEPDVGH SLSDNISLRH KAGVSSGFIA SGSSLENGYN QGFHSATQLP AFIDNSPFHV
501: NSSIHKITRG ASAGKVSGVF EASNAFDAMK FASISRFHPH SLPEYRESLA TGSPYNFSST INTASNIGTG STESSESRHI QGMSSTGNLA EFNAGGNGNH
601: PHHGLYHMWN GSNLHQQPSS NAMLWQKTPS FVNGACSPGL PQIPSFPRTP PHVLRASHID HQVGSAPVVT ASPWDRQHSF LGESPDASGF RLGSVGSPGF
701: NGSWQLHPPA SHNMFPHVGG NGTELTSNAG QGSPKQLSHV FPGKLPMTLV SKFDTTNERM RNLYSRRSEP NTNNNADKKQ YELDLGRILR GDDNRTTLMI
801: KNIPNKYTSK MLLVAIDEQC RGTYDFLYLP IDFKNKCNVG YAFINMIDPG QIIPFHKAFH GKKWEKFNSE KVAVLAYARI QGKSALIAHF QNSSLMNEDK
901: RCRPILFHTD GPNAGDPEPF PLGNNIRVRP GKIRINGNEE NRSQGNPSSL ASGEESGNAI ESTSSSSKNS D
101: TTESLNYHKR SWSNVHRQPA SSSYGLVGSK IVTNAASRES SLFSSSLSDM FSQKLRLLGN GVLSGQPITV GSLPEEEPYK SLEEIEAETI GNLLPDEDDL
201: FSGVNDELGC STRTRMNDDF EDFDLFSSSG GMELEGDEHL ISGKRTSCGD EDPDYFGVSK GKIPFGEQSS RTLFVRNINS NVEDSELKAL FEQYGDIRTI
301: YTACKHRGFV MISYYDIRAA QNAMKALQNR SLRSRKLDIH YSIPKGNSPE KDIGHGTLMI SNLDSSVLDD ELKQIFGFYG EIREIYEYPQ LNHVKFIEFY
401: DVRAAEASLR ALNGICFAGK HIKLEPGLPK IATCMMHQSH KGKDEPDVGH SLSDNISLRH KAGVSSGFIA SGSSLENGYN QGFHSATQLP AFIDNSPFHV
501: NSSIHKITRG ASAGKVSGVF EASNAFDAMK FASISRFHPH SLPEYRESLA TGSPYNFSST INTASNIGTG STESSESRHI QGMSSTGNLA EFNAGGNGNH
601: PHHGLYHMWN GSNLHQQPSS NAMLWQKTPS FVNGACSPGL PQIPSFPRTP PHVLRASHID HQVGSAPVVT ASPWDRQHSF LGESPDASGF RLGSVGSPGF
701: NGSWQLHPPA SHNMFPHVGG NGTELTSNAG QGSPKQLSHV FPGKLPMTLV SKFDTTNERM RNLYSRRSEP NTNNNADKKQ YELDLGRILR GDDNRTTLMI
801: KNIPNKYTSK MLLVAIDEQC RGTYDFLYLP IDFKNKCNVG YAFINMIDPG QIIPFHKAFH GKKWEKFNSE KVAVLAYARI QGKSALIAHF QNSSLMNEDK
901: RCRPILFHTD GPNAGDPEPF PLGNNIRVRP GKIRINGNEE NRSQGNPSSL ASGEESGNAI ESTSSSSKNS D
001: MPSDIMEQRG VSTPSHFHED IHITSERQFG FMKTDMMPEN QGGRDRLSSM PKSSWTSESY QLKPQSSFSG SHPSGSPNAR NTTNGSQWES SLFSSSMSDL
101: FSRKLRLQGS DMLSTMSANT VVTHREEEPS ESLEEIEAQT IGNLLPDEDD LFAEVTGEVG RKSRANTGDE LDEFDLFSSV GGMELDGDIF SSVSHRNGER
201: GGNNSVGELN RGEIPSRTLL VGNISSNVED YELKVLFEQF GDIQALHTAC KNRGFIMVSY CDIRAAQNAA RALQNKLLRG TKLDIRYSIS KENPSQKDTS
301: KGALLVNNLD SSISNQELNR LVKSYGEVKE IRRTMHDNSQ IYIEFFDVRA AAAALGGLNG LEVAGKKLQL VPTYPEGTRY TSQCAANDTE GCLPKTSYSN
401: TSSGHIGRHF PGMISSTSSD GGSMRVIHNS IGSPVNSFIE RHRSLSIPIG FPPSANGISA SKPVGLQEHG HHFDNSNMGI QSMPNLHPHS FSEYVDNFAN
501: GSPYTSSAFS EMVSDGSKAN EGFMIHNVRG VEGFSGGGIG SPMHQSSRRP INLWSNSNTQ QQNPSSGMMW PNSPSHINSI PTQRPPVTVF SRAPPIMVNM
601: ASSPVHHHIG SAPVLNSPFW DRRQAYVAES LESSGFHIGS HGSMGIPGSS PSHPMDIGSH KTFSVGGNRM DVNSQNAVLR SPQQLSHLFP GRSPMGSMPG
701: SFDSPNERYR NLSHRRSESS SSNADKKLYE LDVDRILRGE DRRTTLMIKN IPNKYTSKML LSAIDEHCKG TYDFLYLPID FKNKCNVGYA FINLIEPEKI
801: VPFFKAFNGK KWEKFNSEKV ATLTYARIQG KTALIAHFQN SSLMNEDKRC RPILFHTDGP NAGDQEPFPM GSNIRSRPGK PRSSSIDNYN SFSISSVSEN
901: REETPNGTDP FLKEN
101: FSRKLRLQGS DMLSTMSANT VVTHREEEPS ESLEEIEAQT IGNLLPDEDD LFAEVTGEVG RKSRANTGDE LDEFDLFSSV GGMELDGDIF SSVSHRNGER
201: GGNNSVGELN RGEIPSRTLL VGNISSNVED YELKVLFEQF GDIQALHTAC KNRGFIMVSY CDIRAAQNAA RALQNKLLRG TKLDIRYSIS KENPSQKDTS
301: KGALLVNNLD SSISNQELNR LVKSYGEVKE IRRTMHDNSQ IYIEFFDVRA AAAALGGLNG LEVAGKKLQL VPTYPEGTRY TSQCAANDTE GCLPKTSYSN
401: TSSGHIGRHF PGMISSTSSD GGSMRVIHNS IGSPVNSFIE RHRSLSIPIG FPPSANGISA SKPVGLQEHG HHFDNSNMGI QSMPNLHPHS FSEYVDNFAN
501: GSPYTSSAFS EMVSDGSKAN EGFMIHNVRG VEGFSGGGIG SPMHQSSRRP INLWSNSNTQ QQNPSSGMMW PNSPSHINSI PTQRPPVTVF SRAPPIMVNM
601: ASSPVHHHIG SAPVLNSPFW DRRQAYVAES LESSGFHIGS HGSMGIPGSS PSHPMDIGSH KTFSVGGNRM DVNSQNAVLR SPQQLSHLFP GRSPMGSMPG
701: SFDSPNERYR NLSHRRSESS SSNADKKLYE LDVDRILRGE DRRTTLMIKN IPNKYTSKML LSAIDEHCKG TYDFLYLPID FKNKCNVGYA FINLIEPEKI
801: VPFFKAFNGK KWEKFNSEKV ATLTYARIQG KTALIAHFQN SSLMNEDKRC RPILFHTDGP NAGDQEPFPM GSNIRSRPGK PRSSSIDNYN SFSISSVSEN
901: REETPNGTDP FLKEN
Arabidopsis Description
ML1Protein MEI2-like 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8W4I9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.