CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus, plastid
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH37781	Soybean	nucleus	95.59	95.59
VIT_10s0003g02670.t01	Wine grape	nucleus	73.67	71.83
KRG98918	Soybean	plastid	65.66	66.04
KRH46056	Soybean	nucleus, plastid	65.31	65.77
PGSC0003DMT400007982	Potato	nucleus	64.04	64.86
Solyc02g071270.1.1	Tomato	extracellular	61.25	62.34
GSMUA_Achr10P...	Banana	nucleus	59.51	60.85
EER89028	Sorghum	nucleus	57.08	58.22
Os02t0719800-02	Rice	plasma membrane	56.96	57.9
Zm00001d045611_P001	Maize	nucleus	56.73	57.73
Zm00001d035869_P017	Maize	golgi	56.15	56.74
TraesCS7A01G003100.1	Wheat	plastid	55.1	54.72
TraesCS7D01G003000.1	Wheat	plastid	55.1	54.6
TraesCS4A01G495500.1	Wheat	plastid	55.45	54.57
HORVU7Hr1G000370.12	Barley	nucleus, plastid	55.22	53.6
GSMUA_Achr4P31220_001	Banana	plastid	54.64	52.33
GSMUA_Achr6P13670_001	Banana	nucleus	37.12	51.78
Os02t0319100-01	Rice	nucleus	47.68	50.68
GSMUA_Achr6P13690_001	Banana	golgi, plasma membrane	59.63	37.38
GSMUA_Achr3P03100_001	Banana	nucleus	56.73	36.82
GSMUA_Achr2P20130_001	Banana	nucleus	50.93	35.75
KRH59735	Soybean	nucleus	39.21	35.65
KRH41056	Soybean	nucleus	38.98	35.22
KRH54096	Soybean	nucleus	39.33	35.06
KRH63864	Soybean	nucleus	39.44	35.02
KRH45198	Soybean	nucleus	26.45	30.89
KRH31364	Soybean	cytosol, nucleus	5.8	28.9
KRG97510	Soybean	nucleus	17.4	27.83
KRH31365	Soybean	nucleus	10.09	26.77
KRH16604	Soybean	cytosol, nucleus, peroxisome	6.73	21.32
KRH18810	Soybean	cytosol	6.03	19.33
KRH24390	Soybean	nucleus	7.54	18.41
KRH29371	Soybean	nucleus	7.66	17.93

Protein Annotations

EntrezGene:100800877	Gene3D:3.30.70.330	MapMan:35.1	EMBL:ACUP02009402	EnsemblPlantsGene:GLYMA_15G196800	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	UniProt:I1MHW2	InterPro:IPR000504	InterPro:IPR012677
EnsemblPlants:KRH12823	ProteinID:KRH12823	ProteinID:KRH12823.1	InterPro:MEI2-like_RRM3	InterPro:MEI2_like_RRM1	InterPro:Mei2-like_Rrm_C
InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFAM:PF04059	PFscan:PS50102	PANTHER:PTHR44127	PANTHER:PTHR44127:SF5
InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360	SUPFAM:SSF54928	UniParc:UPI000233B185	SEG:seg

Description

hypothetical protein

Coordinates

chr15:-:22760601..22767239

Molecular Weight (calculated)

94269.8 Da

IEP (calculated)

6.618

GRAVY (calculated)

-0.565

Length

862 amino acids

Sequence
(BLAST)

001: MRQSFDPSFL GPSKIPSIKV PGKAGNGAWE ALSGSDSYHA SSDASLFSSS LPVLPHEKLN LNETANGYQS IDDISSGFKK LHQDADGNGS LEDGDTHAIG
101: PALPDDEEEL LAGITDDFDL SGLPGSLEDL EEYDLFGSGG GMELETDPQE GLTVGLSKLS FADSTVGNGL PPYSFPNGVG TVAGEHPYGE HPSRTLFVRN
201: INSNVEDSEL RALFEQYGDI RTLYTACKHR GFVMISYYDI RAARTAMRAL QNKPLRRRKL DIHFSIPKDN PSDKDINQGT LVVFNLDPSV SNEDLRQIFG
301: AYGEVKEIRE TPHKRHHKFI EFYDVRAAEA ALKSLNRSDI AGKRIKLEPS RPGGARRNLM LQLNQELDQD ESRSFRYQVG SPVANSPPGN WLQFNSPVEQ
401: NSMQTINYSP GSRIISPTTG NHLPGLASIL QPQVSNTVKA AAIGNDLERS SQGEHIFTGM NSSHGATFQS HSLPEPKFSQ YRGALSSIGP STSNGSSVET
501: LSGPQFLWGS PTLYSEHTKP SAWPRSSVGH PFASNGKSHA FPYSTQNSSF VGSSQHLHHH HVGSAPSGLP FERHFGFHPE SSETSFMNNV GYGGIGPGHN
601: DGNHMVNVGG SVNPNITIPR NISDNGSSNF RMRSSPRLSP VFLGNGPFPG LPPTTLEGLA DRARSRWIEN NGSQVDSKKQ FQLNLDKIKS GEDTRTTLMI
701: KNIPNKYTSK MLLAAIDENH RGTYDFLYLP IDFKNKCNVG YAFINMLSPS LIIPFFETFN GKKWEKFNSE KVASLAYARI QGKSALVSHF QNSSLMNEDK
801: RCRPILFHSE GSEVCDLIVQ DHHLPSNSNN LNIQAPRPSE FYSSDFAGSP PKAGPSASLD AN

Best Arabidopsis Sequence Match ( AT1G29400.3 )
(BLAST)

001: MDIPHEAEAG AWGILPGFGR HHHPSSDATL FSSSLPVFPR GKLQLSDNRD GFSLIDDTAV SRTNKFNESA DDFESHSIGN LLPDEEDLLT GMMDDLDLGE
101: LPDADDYDLF GSGGGMELDA DFRDNLSMSG PPRLSLSSLG GNAIPQFNIP NGAGTVAGEH PYGEHPSRTL FVRNINSNVE DSELTALFEQ YGDIRTLYTT
201: CKHRGFVMIS YYDIRSARMA MRSLQNKPLR RRKLDIHFSI PKDNPSEKDM NQGTLVVFNL DPSISNDDLH GIFGAHGEIK EIRETPHKRH HKFVEFYDVR
301: GAEAALKALN RCEIAGKRIK VEPSRPGGAR RSLMLQLNQD LENDDLHYLP MIGSPMANSP PMQGNWPLNS PVEGSPLQSV LSRSPVFGLS PTRNGHLSGL
401: ASALNSQGPS SKLAPIGRGQ IGSNGFQQSS HLFQEPKMDN KYTGNLSPSG PLISNGGGIE TLSGSEFLWG SPNARSEPSS SSVWSTSSTG NPLFSTRVDR
501: SVPFPHQHQN QSRSHHHFHV GSAPSGVPLE KHFGFVPESS KDALFMNTVG LQGMSGMGLN GGSFSSKMAN NGIINSGSMA ENGFSSYRMM SSPRFSPMFL
601: SSGLNPGRFA SGFDSLYENG RPRRVENNSN QVESRKQFQL DLEKILNGED SRTTLMIKNI PNKYTSKMLL AAIDEKNQGT YNFLYLPIDF KNKCNVGYAF
701: INMLNPELII PFYEAFNGKK WEKFNSEKVA SLAYARIQGK SALIAHFQNS SLMNEDMRCR PIIFDTPNNP ESVEQVVDEE SKNMDLLDSQ LSDDDGRERS

Arabidopsis Description

ML5Protein MEI2-like 5 [Source:UniProtKB/Swiss-Prot;Acc:Q8VWF5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.