CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d045611_P001	Maize	nucleus	93.61	93.39
Zm00001d035869_P017	Maize	golgi	93.14	92.26
Os02t0719800-02	Rice	plasma membrane	82.72	82.43
TraesCS7A01G003100.1	Wheat	plastid	80.36	78.23
TraesCS4A01G495500.1	Wheat	plastid	80.71	77.85
TraesCS7D01G003000.1	Wheat	plastid	80.12	77.82
HORVU7Hr1G000370.12	Barley	nucleus, plastid	80.36	76.46
GSMUA_Achr10P...	Banana	nucleus	58.82	58.96
VIT_10s0003g02670.t01	Wine grape	nucleus	60.12	57.47
KRH12823	Soybean	nucleus	58.22	57.08
KRH37781	Soybean	nucleus	57.87	56.73
PGSC0003DMT400007982	Potato	nucleus	52.31	51.94
GSMUA_Achr4P31220_001	Banana	plastid	53.49	50.22
Solyc02g071270.1.1	Tomato	extracellular	49.82	49.7
GSMUA_Achr6P13670_001	Banana	nucleus	35.5	48.54
EES05145	Sorghum	nucleus	43.08	36.51
GSMUA_Achr6P13690_001	Banana	golgi, plasma membrane	59.29	36.44
GSMUA_Achr3P03100_001	Banana	nucleus	56.69	36.07
GSMUA_Achr2P20130_001	Banana	nucleus	51.24	35.26
OQU81438	Sorghum	plastid	37.04	29.58
OQU77194	Sorghum	plastid	25.33	26.16
EES01930	Sorghum	nucleus	15.86	20.12
EES04542	Sorghum	plastid	7.81	19.02
OQU89813	Sorghum	nucleus, plastid	7.46	17.12

Protein Annotations

Gene3D:3.30.70.330	MapMan:35.1	EntrezGene:8065359	UniProt:C5Z227	EnsemblPlants:EER89028	ProteinID:EER89028
ProteinID:EER89028.2	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	InterPro:IPR000504
InterPro:IPR012677	InterPro:MEI2-like_RRM3	InterPro:MEI2_like_RRM1	InterPro:Mei2-like_Rrm_C	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076
PFAM:PF04059	PFscan:PS50102	PANTHER:PTHR44127	PANTHER:PTHR44127:SF5	InterPro:RBD_domain_sf	InterPro:RRM_dom
SMART:SM00360	EnsemblPlantsGene:SORBI_3010G001500	SUPFAM:SSF54928	unigene:Sbi.2069	UniParc:UPI0007F1AB03	SEG:seg

Description

hypothetical protein

Coordinates

chr10:-:135600..141683

Molecular Weight (calculated)

93439.0 Da

IEP (calculated)

6.580

GRAVY (calculated)

-0.626

Length

845 amino acids

Sequence
(BLAST)

001: MDRSSDHFNP PGLAVPAASK SRQMAANNNP WRGPLPPLLN ARAGFGDTSL FSSSLPVLSH EKLIFSDSAH GTPSMDDTSA KMKLLADDPD EKDYKFDFDL
101: RQIDDLLPDE DEFFAGITDE TEPVGQTNTT EELEEFDVFG NGGGMELDID PVESITVGFA NSSIVDGARG NGINPFGVPS TVGTVAGEHP FGEHPSRTLF
201: VRNINSNVED SELRSLFEQY GDIRTLYTAT KHRGFVMISY FDIRAARNAM RALQNKPLRR RKLDIHFSIP KENPSDKDLN QGTLVIFNLD PSVSNEEVRQ
301: IFGAYGEVKE IRETPNKKHH KFIEFYDVRA AEAALRSLNK SEIAGKRIKL EPSRPGGTRR NFMQQLGHDL DQEEPRSYRH SHVGSPVANS PPGAWAYSSP
401: TDNNMLQAFT RSPTGNGMSP IGMPSLISNA PKIAPIGKDS NWSKYDQVFS NGNQSQGAAF QHSHSYQDHN SEYMSSSPGT LSGPQFLWGS PKPYSEHSKS
501: PIWRPPAIGP ALSSSSRTQG QGFLYSSRQA SLFGSSDQHH HHVGSAPSGA PFESHFGFLP ESPETSFMKQ VRFGNMGNVG TGRNGGALML GMAGRASVNP
601: GSSLIGSLTD NSSTNFRPIL SPRLGQAFYT NPPYHGPGTF GLDNSIDRAR NRRVDSSVLQ ADSKRQYQLD LEKIRRSDDT RTTLMIKNIP NKYTSKMLLA
701: AIDEFHKGTY DFFYLPIDFK NKCNVGYAFI NMISPVHIIS FYQAFNGKKW EKFNSEKVAS LAYARIQGRS ALISHFQNSS LMNEDKRCRP ILFNPNGQDS
801: VNQEAFPING ICIHMPLEDD CLDNEEDKNQ NEKTGESSTD IGGSL

Best Arabidopsis Sequence Match ( AT1G29400.3 )
(BLAST)

001: MDIPHEAEAG AWGILPGFGR HHHPSSDATL FSSSLPVFPR GKLQLSDNRD GFSLIDDTAV SRTNKFNESA DDFESHSIGN LLPDEEDLLT GMMDDLDLGE
101: LPDADDYDLF GSGGGMELDA DFRDNLSMSG PPRLSLSSLG GNAIPQFNIP NGAGTVAGEH PYGEHPSRTL FVRNINSNVE DSELTALFEQ YGDIRTLYTT
201: CKHRGFVMIS YYDIRSARMA MRSLQNKPLR RRKLDIHFSI PKDNPSEKDM NQGTLVVFNL DPSISNDDLH GIFGAHGEIK EIRETPHKRH HKFVEFYDVR
301: GAEAALKALN RCEIAGKRIK VEPSRPGGAR RSLMLQLNQD LENDDLHYLP MIGSPMANSP PMQGNWPLNS PVEGSPLQSV LSRSPVFGLS PTRNGHLSGL
401: ASALNSQGPS SKLAPIGRGQ IGSNGFQQSS HLFQEPKMDN KYTGNLSPSG PLISNGGGIE TLSGSEFLWG SPNARSEPSS SSVWSTSSTG NPLFSTRVDR
501: SVPFPHQHQN QSRSHHHFHV GSAPSGVPLE KHFGFVPESS KDALFMNTVG LQGMSGMGLN GGSFSSKMAN NGIINSGSMA ENGFSSYRMM SSPRFSPMFL
601: SSGLNPGRFA SGFDSLYENG RPRRVENNSN QVESRKQFQL DLEKILNGED SRTTLMIKNI PNKYTSKMLL AAIDEKNQGT YNFLYLPIDF KNKCNVGYAF
701: INMLNPELII PFYEAFNGKK WEKFNSEKVA SLAYARIQGK SALIAHFQNS SLMNEDMRCR PIIFDTPNNP ESVEQVVDEE SKNMDLLDSQ LSDDDGRERS

Arabidopsis Description

ML5Protein MEI2-like 5 [Source:UniProtKB/Swiss-Prot;Acc:Q8VWF5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.