Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- nucleus 2
- extracellular 5
- endoplasmic reticulum 5
- vacuole 4
- plasma membrane 4
- golgi 5
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
extracellular:
29876421
|
msms PMID:
29876421
doi
Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400007982 | Potato | nucleus | 92.21 | 91.77 |
| VIT_10s0003g02670.t01 | Wine grape | nucleus | 64.58 | 61.88 |
| KRH12823 | Soybean | nucleus | 62.34 | 61.25 |
| KRH37781 | Soybean | nucleus | 61.87 | 60.79 |
| Solyc10g007770.2.1 | Tomato | nucleus, plastid | 54.07 | 53.95 |
| Solyc07g056340.2.1 | Tomato | nucleus | 51.24 | 53.85 |
| GSMUA_Achr10P... | Banana | nucleus | 53.13 | 53.38 |
| Os02t0719800-02 | Rice | plasma membrane | 50.53 | 50.47 |
| EER89028 | Sorghum | nucleus | 49.7 | 49.82 |
| TraesCS7D01G003000.1 | Wheat | plastid | 51.0 | 49.66 |
| TraesCS7A01G003100.1 | Wheat | plastid | 50.77 | 49.54 |
| Zm00001d035869_P017 | Maize | golgi | 49.82 | 49.47 |
| Zm00001d045611_P001 | Maize | nucleus | 49.35 | 49.35 |
| TraesCS4A01G495500.1 | Wheat | plastid | 50.89 | 49.2 |
| HORVU7Hr1G000370.12 | Barley | nucleus, plastid | 51.24 | 48.87 |
| GSMUA_Achr6P13670_001 | Banana | nucleus | 34.47 | 47.25 |
| GSMUA_Achr4P31220_001 | Banana | plastid | 48.76 | 45.89 |
| Os02t0319100-01 | Rice | nucleus | 43.09 | 45.01 |
| Solyc05g023740.2.1 | Tomato | nucleus | 40.97 | 35.7 |
| GSMUA_Achr6P13690_001 | Banana | golgi, plasma membrane | 53.84 | 33.16 |
| GSMUA_Achr3P03100_001 | Banana | nucleus | 50.06 | 31.93 |
| GSMUA_Achr2P20130_001 | Banana | nucleus | 45.93 | 31.68 |
| Solyc01g110220.1.1 | Tomato | cytosol | 7.56 | 26.23 |
| Solyc05g013930.1.1 | Tomato | nucleus | 17.59 | 23.5 |
| Solyc01g110260.1.1 | Tomato | cytosol | 5.08 | 23.12 |
| Solyc01g110240.1.1 | Tomato | cytosol, peroxisome, plastid | 5.43 | 23.0 |
| Solyc01g110210.1.1 | Tomato | nucleus | 6.14 | 20.23 |
| Solyc01g110230.1.1 | Tomato | cytosol | 5.79 | 19.29 |
| Solyc01g110200.1.1 | Tomato | plastid | 6.26 | 19.13 |
| Solyc05g056360.1.1 | Tomato | cytosol | 7.44 | 19.09 |
Protein Annotations
| Gene3D:3.30.70.330 | MapMan:35.1 | GO:GO:0000003 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 |
| GO:GO:0003729 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0007049 | GO:GO:0008150 | GO:GO:0009987 |
| GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016043 | GO:GO:0040007 | GO:GO:0045836 | GO:GO:0045927 |
| InterPro:IPR000504 | InterPro:IPR012677 | UniProt:K4B8A3 | InterPro:MEI2-like_RRM3 | InterPro:MEI2_like_RRM1 | InterPro:Mei2-like_Rrm_C |
| InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 | PFAM:PF04059 | PFscan:PS50102 | PANTHER:PTHR44127 | PANTHER:PTHR44127:SF5 |
| InterPro:RBD_domain_sf | InterPro:RRM_dom | SMART:SM00360 | SUPFAM:SSF54928 | EnsemblPlantsGene:Solyc02g071270.1 | EnsemblPlants:Solyc02g071270.1.1 |
| TMHMM:TMhelix | UniParc:UPI0002768C07 | SEG:seg | : | : | : |
Description
No Description!
Coordinates
chr2:-:40752653..40761392
Molecular Weight (calculated)
93731.4 Da
IEP (calculated)
6.780
GRAVY (calculated)
-0.421
Length
847 amino acids
Sequence
(BLAST)
(BLAST)
001: MIGCVFIYIF FFFYSFCLIV VHFLWSLCSD ILKMPMINVS KEKGRTPWEI RPGSNSVLIT NDASLFTSSV PVLQHEKLKV SDGDHGHQSV DDASPSLTIH
101: PDVEVDVLLD DGENRAIGSL LPDDEDELLA GIMDGFDPSQ LPNHTNDLEE YDFFESIGGL ELEFDGQEHL NLGISRVSLA DPDSNGAAIY GLSNGGGAVT
201: GEHPLGEHPS RTLFVRNINS NVEDAELRTL FEQYGDIRTL YTACKHRGFV MISYFDIRAA RTAMRALQNK PLRRRKLDIH FSIPKDNPSD KDVNQGTLVV
301: FNLDPSISND DLRRVFGPYG EIKEIRETPY KKHHKFIEYY DVRAAEAALR SLHKRDIAGK RIKLEPSRPG GARRNLVLQS SQDSEQDDSW TFRHPLVSSI
401: GTSSPGNWPQ FGSPIEHGSM QSPGTSPGFR SLSPTIANNL HGLASILHPR ASNTLRVAPI GNARTMSGRA DFPIGSNHGV PFPQSNSFAE PKISHFGGTM
501: SSFGASSTNG SAVETLSGPQ FLWGSPKLQS QQSNSSAWKT ESLGNAFSFG GQGDRFSLSN HQKSFLNSSQ HHLHHIGSAP SGLPLDRHFG FYPDSSILSP
601: GFRGMGIGTR DESLMVNYGS RTTLNAGVAV PRNMSDNASP RFGMISSQKL SPLFLGNGHF PGHAATSFEG LTERSRTRRV ENNNGNQMDN KKLFLLDLDK
701: IRCGEDTRTT LMIKNIPNKY TSKMLLAAID EQHKGTFDFL YLPIDFKNKC NVGYAFINML SPSLIIPFYE WEKFNSEKVA ALAYARIQGK TALVAHFQNS
801: SLMNEDKRCR PILFHSESSE LGDQIVQEHL SSGCSQPEDP VGKLENR
101: PDVEVDVLLD DGENRAIGSL LPDDEDELLA GIMDGFDPSQ LPNHTNDLEE YDFFESIGGL ELEFDGQEHL NLGISRVSLA DPDSNGAAIY GLSNGGGAVT
201: GEHPLGEHPS RTLFVRNINS NVEDAELRTL FEQYGDIRTL YTACKHRGFV MISYFDIRAA RTAMRALQNK PLRRRKLDIH FSIPKDNPSD KDVNQGTLVV
301: FNLDPSISND DLRRVFGPYG EIKEIRETPY KKHHKFIEYY DVRAAEAALR SLHKRDIAGK RIKLEPSRPG GARRNLVLQS SQDSEQDDSW TFRHPLVSSI
401: GTSSPGNWPQ FGSPIEHGSM QSPGTSPGFR SLSPTIANNL HGLASILHPR ASNTLRVAPI GNARTMSGRA DFPIGSNHGV PFPQSNSFAE PKISHFGGTM
501: SSFGASSTNG SAVETLSGPQ FLWGSPKLQS QQSNSSAWKT ESLGNAFSFG GQGDRFSLSN HQKSFLNSSQ HHLHHIGSAP SGLPLDRHFG FYPDSSILSP
601: GFRGMGIGTR DESLMVNYGS RTTLNAGVAV PRNMSDNASP RFGMISSQKL SPLFLGNGHF PGHAATSFEG LTERSRTRRV ENNNGNQMDN KKLFLLDLDK
701: IRCGEDTRTT LMIKNIPNKY TSKMLLAAID EQHKGTFDFL YLPIDFKNKC NVGYAFINML SPSLIIPFYE WEKFNSEKVA ALAYARIQGK TALVAHFQNS
801: SLMNEDKRCR PILFHSESSE LGDQIVQEHL SSGCSQPEDP VGKLENR
001: MDIPHEAEAG AWGILPGFGR HHHPSSDATL FSSSLPVFPR GKLQLSDNRD GFSLIDDTAV SRTNKFNESA DDFESHSIGN LLPDEEDLLT GMMDDLDLGE
101: LPDADDYDLF GSGGGMELDA DFRDNLSMSG PPRLSLSSLG GNAIPQFNIP NGAGTVAGEH PYGEHPSRTL FVRNINSNVE DSELTALFEQ YGDIRTLYTT
201: CKHRGFVMIS YYDIRSARMA MRSLQNKPLR RRKLDIHFSI PKDNPSEKDM NQGTLVVFNL DPSISNDDLH GIFGAHGEIK EIRETPHKRH HKFVEFYDVR
301: GAEAALKALN RCEIAGKRIK VEPSRPGGAR RSLMLQLNQD LENDDLHYLP MIGSPMANSP PMQGNWPLNS PVEGSPLQSV LSRSPVFGLS PTRNGHLSGL
401: ASALNSQGPS SKLAPIGRGQ IGSNGFQQSS HLFQEPKMDN KYTGNLSPSG PLISNGGGIE TLSGSEFLWG SPNARSEPSS SSVWSTSSTG NPLFSTRVDR
501: SVPFPHQHQN QSRSHHHFHV GSAPSGVPLE KHFGFVPESS KDALFMNTVG LQGMSGMGLN GGSFSSKMAN NGIINSGSMA ENGFSSYRMM SSPRFSPMFL
601: SSGLNPGRFA SGFDSLYENG RPRRVENNSN QVESRKQFQL DLEKILNGED SRTTLMIKNI PNKYTSKMLL AAIDEKNQGT YNFLYLPIDF KNKCNVGYAF
701: INMLNPELII PFYEAFNGKK WEKFNSEKVA SLAYARIQGK SALIAHFQNS SLMNEDMRCR PIIFDTPNNP ESVEQVVDEE SKNMDLLDSQ LSDDDGRERS
101: LPDADDYDLF GSGGGMELDA DFRDNLSMSG PPRLSLSSLG GNAIPQFNIP NGAGTVAGEH PYGEHPSRTL FVRNINSNVE DSELTALFEQ YGDIRTLYTT
201: CKHRGFVMIS YYDIRSARMA MRSLQNKPLR RRKLDIHFSI PKDNPSEKDM NQGTLVVFNL DPSISNDDLH GIFGAHGEIK EIRETPHKRH HKFVEFYDVR
301: GAEAALKALN RCEIAGKRIK VEPSRPGGAR RSLMLQLNQD LENDDLHYLP MIGSPMANSP PMQGNWPLNS PVEGSPLQSV LSRSPVFGLS PTRNGHLSGL
401: ASALNSQGPS SKLAPIGRGQ IGSNGFQQSS HLFQEPKMDN KYTGNLSPSG PLISNGGGIE TLSGSEFLWG SPNARSEPSS SSVWSTSSTG NPLFSTRVDR
501: SVPFPHQHQN QSRSHHHFHV GSAPSGVPLE KHFGFVPESS KDALFMNTVG LQGMSGMGLN GGSFSSKMAN NGIINSGSMA ENGFSSYRMM SSPRFSPMFL
601: SSGLNPGRFA SGFDSLYENG RPRRVENNSN QVESRKQFQL DLEKILNGED SRTTLMIKNI PNKYTSKMLL AAIDEKNQGT YNFLYLPIDF KNKCNVGYAF
701: INMLNPELII PFYEAFNGKK WEKFNSEKVA SLAYARIQGK SALIAHFQNS SLMNEDMRCR PIIFDTPNNP ESVEQVVDEE SKNMDLLDSQ LSDDDGRERS
Arabidopsis Description
ML5Protein MEI2-like 5 [Source:UniProtKB/Swiss-Prot;Acc:Q8VWF5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.