Factsheet for GSMUA_Achr4P31220_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
nucleus 1
plasma membrane 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr10P...	Banana	nucleus	55.33	59.07
KRH12823	Soybean	nucleus	52.33	54.64
KRH37781	Soybean	nucleus	51.89	54.18
VIT_10s0003g02670.t01	Wine grape	nucleus	52.67	53.62
EER89028	Sorghum	nucleus	50.22	53.49
Os02t0719800-02	Rice	plasma membrane	49.89	52.95
Zm00001d045611_P001	Maize	nucleus	49.56	52.66
Zm00001d035869_P017	Maize	golgi	49.78	52.52
TraesCS7A01G003100.1	Wheat	plastid	49.11	50.92
TraesCS7D01G003000.1	Wheat	plastid	49.22	50.92
PGSC0003DMT400007982	Potato	nucleus	47.89	50.65
TraesCS4A01G495500.1	Wheat	plastid	49.11	50.46
HORVU7Hr1G000370.12	Barley	nucleus, plastid	49.0	49.66
GSMUA_Achr6P13670_001	Banana	nucleus	33.89	49.35
Solyc02g071270.1.1	Tomato	extracellular	45.89	48.76
Os02t0319100-01	Rice	nucleus	41.44	45.99
GSMUA_Achr10P...	Banana	nucleus	39.89	37.55
GSMUA_Achr6P13690_001	Banana	golgi, plasma membrane	56.89	37.24
GSMUA_Achr2P21440_001	Banana	mitochondrion, nucleus	38.0	36.93
GSMUA_Achr3P03100_001	Banana	nucleus	53.22	36.07
GSMUA_Achr10P...	Banana	nucleus	40.33	35.91
GSMUA_Achr2P20130_001	Banana	nucleus	48.11	35.26
GSMUA_Achr6P11050_001	Banana	nucleus	37.67	35.13
GSMUA_Achr11P...	Banana	cytosol	5.56	31.25
GSMUA_Achr7P02820_001	Banana	cytosol, nucleus, plastid	13.89	24.75
GSMUA_Achr5P05840_001	Banana	cytosol, mitochondrion, nucleus, plasma membrane	8.11	24.66
GSMUA_Achr8P01280_001	Banana	cytoskeleton, cytosol, nucleus	14.67	23.0
GSMUA_Achr8P32080_001	Banana	nucleus	15.0	19.54

Protein Annotations

Gene3D:3.30.70.330	MapMan:35.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488
EnsemblPlantsGene:GSMUA_Achr4G31220_001	EnsemblPlants:GSMUA_Achr4P31220_001	EnsemblPlants:GSMUA_Achr4T31220_001	InterPro:IPR000504	InterPro:IPR012677	UniProt:M0STN4
InterPro:MEI2-like_RRM3	InterPro:MEI2_like_RRM1	InterPro:Mei2-like_Rrm_C	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFAM:PF04059
PFscan:PS50102	PANTHER:PTHR44127	PANTHER:PTHR44127:SF5	InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360
SUPFAM:SSF54928	UniParc:UPI0002951685	SEG:seg	:	:	:

Description

AML1, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr4G31220_001]

Coordinates

chr4:+:28478664..28487357

Molecular Weight (calculated)

99732.3 Da

IEP (calculated)

7.121

GRAVY (calculated)

-0.424

Length

900 amino acids

Sequence
(BLAST)

001: MSDCLSIGLL SVSSNKLVPR AGTNLWKGPS SSSAFYGSAD ASLFSSSLPV IRHGKYSVHG VHSADNSSSQ LKTHSQYLEG EFMVDELDFQ EDEVLLPNNE
101: EDLLAGIMDG FDLTNLPKLV DASEDCDLFG SVGGFELDSG PTESITASME KVSISDSYAE NGISQHILPN GFGTVSGEHP YGEHPSRTLF VRNINSNVED
201: SELRSLFAPY GDIRSLYTAC KHRGFVMISY YDIRAAKNAM RALQNKPLRR RKLDIHFSIP KENPSDKDMN QGTLVIFNLD SSVSNDDLFQ IFGVHGEIKE
301: IRETPNKWHH KFIEFYDVRA AEAALQSLNK CELGGKRIKL EPSRPGGARR NLMQQTTYNL DPVEARVHQH HGNSPVNSFT GWFHSLWMSG TWFQFNSPNE
401: CSPFQQALCK TPAGRIINSI GSDCLPGLST ILSPVMSNST KVGLIKDQEK VNYADQLYSG SNSSHEGKFQ HCGSPRDHNS GILASSPGPL SSLGPSASNV
501: SGFGSLTGSQ FLFGSPTSNM DQPQSSWRSP VTGLPFPSND RQQRQNIFYS NQHDSFPGLS HGQHHLVGSA PPGVPFKRHY SYFPETPETS VMNKVAFGNM
601: QVTQNSGSGP TALWNPGIVL TGNIPDNSSP KLRMMQYQIS GPNFFGNNQY PGSGSFGLQG HSRQFDSQGS QDDNKKRYLL DLDKIVRGED TRTTLMIKNI
701: PNKYTSKMLL AAIDENHKGT YDFLYLPIDF KNKCNVGYAF INMVSPSHII SFYKTFNGKK WEKLNSEKVA LLAYARIQGK AALCAHFENS SLMNEDKRCR
801: PVILYSEGSD NIDQKLIPLN GVDLHVHQQD ETNSVGDSTK NSLTLSRSLV PAHRFVKEVV INHCYCSLHL KAFLFLIFSL PFSVLNSFYL QHGVTFCSFL

Best Arabidopsis Sequence Match ( AT1G29400.3 )
(BLAST)

001: MDIPHEAEAG AWGILPGFGR HHHPSSDATL FSSSLPVFPR GKLQLSDNRD GFSLIDDTAV SRTNKFNESA DDFESHSIGN LLPDEEDLLT GMMDDLDLGE
101: LPDADDYDLF GSGGGMELDA DFRDNLSMSG PPRLSLSSLG GNAIPQFNIP NGAGTVAGEH PYGEHPSRTL FVRNINSNVE DSELTALFEQ YGDIRTLYTT
201: CKHRGFVMIS YYDIRSARMA MRSLQNKPLR RRKLDIHFSI PKDNPSEKDM NQGTLVVFNL DPSISNDDLH GIFGAHGEIK EIRETPHKRH HKFVEFYDVR
301: GAEAALKALN RCEIAGKRIK VEPSRPGGAR RSLMLQLNQD LENDDLHYLP MIGSPMANSP PMQGNWPLNS PVEGSPLQSV LSRSPVFGLS PTRNGHLSGL
401: ASALNSQGPS SKLAPIGRGQ IGSNGFQQSS HLFQEPKMDN KYTGNLSPSG PLISNGGGIE TLSGSEFLWG SPNARSEPSS SSVWSTSSTG NPLFSTRVDR
501: SVPFPHQHQN QSRSHHHFHV GSAPSGVPLE KHFGFVPESS KDALFMNTVG LQGMSGMGLN GGSFSSKMAN NGIINSGSMA ENGFSSYRMM SSPRFSPMFL
601: SSGLNPGRFA SGFDSLYENG RPRRVENNSN QVESRKQFQL DLEKILNGED SRTTLMIKNI PNKYTSKMLL AAIDEKNQGT YNFLYLPIDF KNKCNVGYAF
701: INMLNPELII PFYEAFNGKK WEKFNSEKVA SLAYARIQGK SALIAHFQNS SLMNEDMRCR PIIFDTPNNP ESVEQVVDEE SKNMDLLDSQ LSDDDGRERS

Arabidopsis Description

ML5Protein MEI2-like 5 [Source:UniProtKB/Swiss-Prot;Acc:Q8VWF5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.