Factsheet for GSMUA_Achr8P32080_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
extracellular 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	extracellular, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	extracellular
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr7P02820_001	Banana	cytosol, nucleus, plastid	58.32	79.8
KRH31364	Soybean	cytosol, nucleus	16.21	64.74
GSMUA_Achr8P01280_001	Banana	cytoskeleton, cytosol, nucleus	50.94	61.32
KRG97510	Soybean	nucleus	34.44	44.16
CDY01848	Canola	plastid	31.98	44.02
GSMUA_Achr11P...	Banana	cytosol	10.13	43.75
VIT_14s0219g00270.t01	Wine grape	plastid	35.17	43.47
Zm00001d042445_P001	Maize	nucleus	41.53	43.22
EES01930	Sorghum	nucleus	41.53	43.09
Solyc05g013930.1.1	Tomato	nucleus	39.07	42.59
Os01t0907900-01	Rice	nucleus	41.82	42.31
CDY56219	Canola	plastid	31.69	41.63
HORVU3Hr1G091930.1	Barley	nucleus	40.52	41.36
VIT_01s0137g00320.t01	Wine grape	nucleus	39.36	41.34
TraesCS3D01G407900.1	Wheat	nucleus	40.09	40.56
TraesCS3B01G447800.1	Wheat	nucleus	39.65	40.53
TraesCS3A01G413400.1	Wheat	nucleus	39.8	40.44
Bra036347.1-P	Field mustard	plastid	31.4	39.89
AT1G67770.1	Thale cress	plastid	30.39	39.85
Bra004255.1-P	Field mustard	plastid	31.69	39.82
CDX83589	Canola	nucleus	32.85	39.07
GSMUA_Achr5P05840_001	Banana	cytosol, mitochondrion, nucleus, plasma membrane	16.64	38.85
CDX99727	Canola	nucleus	33.86	38.81
AT3G26120.1	Thale cress	nucleus	34.3	38.54
CDY40990	Canola	nucleus	34.01	38.4
CDY13612	Canola	nucleus	33.29	37.83
Bra025185.1-P	Field mustard	nucleus	33.14	37.66
PGSC0003DMT400027957	Potato	nucleus	26.34	37.6
KRH31365	Soybean	nucleus	14.47	30.77
GSMUA_Achr6P13670_001	Banana	nucleus	17.08	19.09
GSMUA_Achr10P...	Banana	nucleus	19.97	16.37
GSMUA_Achr10P...	Banana	nucleus	23.3	15.92
GSMUA_Achr10P...	Banana	nucleus	21.85	15.79
GSMUA_Achr6P11050_001	Banana	nucleus	22.0	15.75
GSMUA_Achr2P21440_001	Banana	mitochondrion, nucleus	20.26	15.12
GSMUA_Achr4P31220_001	Banana	plastid	19.54	15.0
GSMUA_Achr2P20130_001	Banana	nucleus	20.26	11.4
GSMUA_Achr3P03100_001	Banana	nucleus	20.41	10.62
GSMUA_Achr6P13690_001	Banana	golgi, plasma membrane	20.26	10.18

Protein Annotations

Gene3D:3.30.70.330	MapMan:35.1	ncoils:Coil	InterPro:EAR1_like_RRM3	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0005488	EnsemblPlantsGene:GSMUA_Achr8G32080_001	EnsemblPlants:GSMUA_Achr8P32080_001	EnsemblPlants:GSMUA_Achr8T32080_001	InterPro:IPR000504
InterPro:IPR012677	UniProt:M0TVG0	InterPro:Mei2-like	InterPro:Mei2-like_Rrm_C	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076
PFAM:PF04059	PFscan:PS50102	PANTHER:PTHR45087	InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360
SUPFAM:SSF54928	UniParc:UPI0002964D17	SEG:seg	:	:	:

Description

Putative Protein terminal ear1 [Source:GMGC_GENE;Acc:GSMUA_Achr8G32080_001]

Coordinates

chr8:+:33605569..33611962

Molecular Weight (calculated)

73829.6 Da

IEP (calculated)

6.551

GRAVY (calculated)

-0.571

Length

691 amino acids

Sequence
(BLAST)

001: MMGDGLSSDN PLERRSGERG LGSLGVARME GGGRGNLLDP AAAEFHPTAA TAGQLALGHP QIYYAYAPPP PPPPHPPVVA VPVFHLQQPQ QVEVAAATRA
101: VALSMVPRHV GEAEVRAGME AFGGVRAVEM GALAAEGVVI VHFFDLRSAE AAVAEVREQH ARQHGGIGFG APAGSAAAGN WAAPWMWCPQ QPGGGRGTIA
201: GQPVWAQFAA VGLDDPNQGS LVVLNSDTTI PLLALREIFE PLGAVKEARE MPSKPQHRVV EFFDTRDAAR AIAELNGKEI NGRRLLLEFS RHGSSHTRSH
301: TRSSPGHAHG HHGSPLPPRF LRGSPQPSRW AQASGASPRS SSSSLRGESS PGSVVVLKRT NTTTTPAAVA RSGSSSGRRN KNSSSSNYPA ASSSSSKQQQ
401: QQQRQSSGGG GSGSGRRSWK NRSKSSGESR FLFKEAESEE SSESSCRDSR TTVMIKNIPN KYSQKLLLNM LDNHCIQCNE QLGEGADEPY SAYDFVYLPI
501: DFNNKCNVGY GFVNLTSPEA AFRLYKAFHL QPWEVFNSRK ICQVTYARLQ GLEALKEHFR NSKFACDNDE YMPVVFSPPR DGRRLTEPVP VVVGREQRMV
601: DLARAQSGCT SLTDETASQQ AADSGGASST TTSTHAPSDN PDGGDDDDDD DDDSNDDEEV GLGMGRRGDD GSGGDETGLQ LSQSVLHLSC N

Best Arabidopsis Sequence Match ( AT3G26120.1 )
(BLAST)

001: MEDSRLFPFV GNLDPRAQEF IPFNPISSGF HFPYTPPPPQ LPPPLPPSSY GLSPTEPRVF TFFNIPPHPM MFSPPPPQPP PPPPRPCFNG VSAAQRLPLP
101: SNTPTRSLSL ISVPRDVTES TVRRDLEVYG DVRGVQMERI SEGIVTVHFY DIRDAKRAVR EVCGRHMQQQ ARGGSVWSSP STSSARGFVS GRPVWAQFVV
201: PATSAVPGGC NQGTLVIFNL DPEVSSITLR QIFQVYGPIK ELRETPYKKH QRFVEFYDVR DAARAFDRMN GKEIGGKQVV IEFSRPGGIK NRFRSSRQPQ
301: LPFQPLREPP ILIPPLRRPV SFIKDKNKNV SPKNGVIAVD ASMRSLCIID ADDNKTRGTR GTESECAETK SKNVAKWGKK RQMKNMELSQ FLISEETMED
401: PSCRDPRTTL MIKNIPNKYS QKLLLDMLDK HCIHINEAIT EEHNKHESHH QPYSSYDFVY LPMDFNNKCN VGYGFVNMTS PEAAWRFYKA FHGQRWEVFN
501: SHKICQITYA RVQGLEDLKE HFKSSKFPCE AELYLPVVFS PPRDGKQLTE PVSINITING CTRLNHNHFE QTVGQDHFLS GSCCDSDHDN SHEDGFSGSS
601: VDCGRSITVE GETSF

Arabidopsis Description

TEL1Terminal EAR1-like 1 [Source:UniProtKB/TrEMBL;Acc:F4JBE2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.