CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 1
mitochondrion 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d042445_P001	Maize	nucleus	88.89	89.16
Os01t0907900-01	Rice	nucleus	69.82	68.08
KRH31364	Soybean	cytosol, nucleus	16.82	64.74
TraesCS3B01G447800.1	Wheat	nucleus	62.01	61.09
TraesCS3A01G413400.1	Wheat	nucleus	61.56	60.29
HORVU3Hr1G091930.1	Barley	nucleus	60.81	59.82
TraesCS3D01G407900.1	Wheat	nucleus	61.26	59.74
GSMUA_Achr7P02820_001	Banana	cytosol, nucleus, plastid	36.49	48.12
GSMUA_Achr8P01280_001	Banana	cytoskeleton, cytosol, nucleus	36.79	42.68
GSMUA_Achr8P32080_001	Banana	nucleus	43.09	41.53
KRG97510	Soybean	nucleus	32.88	40.63
CDY01848	Canola	plastid	30.18	40.04
Solyc05g013930.1.1	Tomato	nucleus	37.39	39.27
Bra036347.1-P	Field mustard	plastid	31.68	38.79
VIT_14s0219g00270.t01	Wine grape	plastid	32.28	38.46
CDY56219	Canola	plastid	30.33	38.4
CDX83589	Canola	nucleus	33.48	38.38
CDX99727	Canola	nucleus	34.53	38.14
CDY40990	Canola	nucleus	34.53	37.58
CDY13612	Canola	nucleus	34.23	37.5
VIT_01s0137g00320.t01	Wine grape	nucleus	36.94	37.39
Bra025185.1-P	Field mustard	nucleus	34.08	37.34
Bra004255.1-P	Field mustard	plastid	30.63	37.09
AT3G26120.1	Thale cress	nucleus	34.08	36.91
AT1G67770.1	Thale cress	plastid	28.98	36.62
PGSC0003DMT400027957	Potato	nucleus	24.47	33.68
KRH31365	Soybean	nucleus	14.11	28.92
EES04542	Sorghum	plastid	13.96	26.8
OQU89813	Sorghum	nucleus, plastid	13.96	25.27
EER89028	Sorghum	nucleus	20.12	15.86
EES05145	Sorghum	nucleus	20.27	13.54
OQU77194	Sorghum	plastid	15.47	12.59
OQU81438	Sorghum	plastid	19.37	12.19

Protein Annotations

Gene3D:3.30.70.330	MapMan:35.1	UniProt:C5XFI7	InterPro:EAR1_like_RRM3	EnsemblPlants:EES01930	ProteinID:EES01930
ProteinID:EES01930.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	InterPro:IPR000504
InterPro:IPR012677	InterPro:Mei2-like	InterPro:Mei2-like_Rrm_C	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFAM:PF04059
PFscan:PS50102	PANTHER:PTHR45087	InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360	EnsemblPlantsGene:SORBI_3003G395200
SUPFAM:SSF54928	UniParc:UPI0001A85103	RefSeq:XP_002456810.1	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr3:+:70564882..70569321

Molecular Weight (calculated)

70893.1 Da

IEP (calculated)

7.621

GRAVY (calculated)

-0.456

Length

666 amino acids

Sequence
(BLAST)

001: MEGGGGSGIG GFPGAPGNLL DAAAQEFHPT VCAPYPLQPL PHQLYCPHTY PAMPPPPQMA MLQPVPPMAM PMAPQPGYTL PTTAPVVDGP SSRVVVLCLV
101: PPHAQERDVA QAMAPFGAIR SADACAVASE GVATVHFFDI RAAELAVACV REQHMRQQSR LGQLYAAAAV PPAWAPAPPT APQAWDWPHP NDDGRGLVLG
201: QVVWAHFAPG ADDGENRGSL VVLSPLPGVS VADLRQVFQA FGDLKDVRES AHRPSHKFID FFDTRDAARA LAELNGQELF GRRLVIEFTR PSGPGPRRRG
301: YAPHHRPTAP TPPRLQQATW RPAQTTSSQP PASSSSSSVS VRAREGVVLL RRPSDQAKGG NAGTRQERKS KGGKNVASSA SAPASSSTPT ASGKQAQKGA
401: GSSGGGGAGG GGGNWKGRKS GWEARFLFKD PESAGDADTQ SSPASERDTR TTVMIRNIPN KYSQKLLLNM LDNHCIQSNE WIAASGEAQP FSSYDFVYLP
501: IDFNNKCNVG YGFVNLTSPE AAVRLYKAFH KQPWEVYNSR KICQVTYARV QGLDALKEHF KNSKFPCDSD EYLPVAFSPA RDGKELTEPV PIVGRSPASG
601: ASSPPKSRAA SVDLLGQELM PAPSSSADGA SSTTTSTHAL SEHADDDDND EDIRLAGELR RLGYAD

Best Arabidopsis Sequence Match ( AT3G26120.1 )
(BLAST)

001: MEDSRLFPFV GNLDPRAQEF IPFNPISSGF HFPYTPPPPQ LPPPLPPSSY GLSPTEPRVF TFFNIPPHPM MFSPPPPQPP PPPPRPCFNG VSAAQRLPLP
101: SNTPTRSLSL ISVPRDVTES TVRRDLEVYG DVRGVQMERI SEGIVTVHFY DIRDAKRAVR EVCGRHMQQQ ARGGSVWSSP STSSARGFVS GRPVWAQFVV
201: PATSAVPGGC NQGTLVIFNL DPEVSSITLR QIFQVYGPIK ELRETPYKKH QRFVEFYDVR DAARAFDRMN GKEIGGKQVV IEFSRPGGIK NRFRSSRQPQ
301: LPFQPLREPP ILIPPLRRPV SFIKDKNKNV SPKNGVIAVD ASMRSLCIID ADDNKTRGTR GTESECAETK SKNVAKWGKK RQMKNMELSQ FLISEETMED
401: PSCRDPRTTL MIKNIPNKYS QKLLLDMLDK HCIHINEAIT EEHNKHESHH QPYSSYDFVY LPMDFNNKCN VGYGFVNMTS PEAAWRFYKA FHGQRWEVFN
501: SHKICQITYA RVQGLEDLKE HFKSSKFPCE AELYLPVVFS PPRDGKQLTE PVSINITING CTRLNHNHFE QTVGQDHFLS GSCCDSDHDN SHEDGFSGSS
601: VDCGRSITVE GETSF

Arabidopsis Description

TEL1Terminal EAR1-like 1 [Source:UniProtKB/TrEMBL;Acc:F4JBE2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.