Factsheet for HORVU3Hr1G091930.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, peroxisome
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	peroxisome

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3A01G413400.1	Wheat	nucleus	90.1	89.71
TraesCS3B01G447800.1	Wheat	nucleus	89.51	89.64
TraesCS3D01G407900.1	Wheat	nucleus	89.81	89.02
Os01t0907900-01	Rice	nucleus	67.36	66.76
Zm00001d042445_P001	Maize	nucleus	61.3	62.5
KRH31364	Soybean	cytosol, nucleus	15.8	61.85
EES01930	Sorghum	nucleus	59.82	60.81
GSMUA_Achr7P02820_001	Banana	cytosol, nucleus, plastid	35.6	47.72
GSMUA_Achr8P01280_001	Banana	cytoskeleton, cytosol, nucleus	35.75	42.16
HORVU6Hr1G025080.3	Barley	mitochondrion	10.49	41.52
CDY01848	Canola	plastid	30.58	41.24
GSMUA_Achr8P32080_001	Banana	nucleus	41.36	40.52
KRG97510	Soybean	nucleus	31.76	39.89
CDY56219	Canola	plastid	30.87	39.73
Solyc05g013930.1.1	Tomato	nucleus	36.78	39.27
VIT_14s0219g00270.t01	Wine grape	plastid	32.2	39.0
Bra004255.1-P	Field mustard	plastid	31.46	38.73
Bra036347.1-P	Field mustard	plastid	30.28	37.68
VIT_01s0137g00320.t01	Wine grape	nucleus	36.48	37.54
AT1G67770.1	Thale cress	plastid	29.1	37.38
CDX83589	Canola	nucleus	31.61	36.83
CDX99727	Canola	nucleus	32.64	36.65
CDY40990	Canola	nucleus	32.64	36.11
AT3G26120.1	Thale cress	nucleus	32.35	35.61
CDY13612	Canola	nucleus	31.76	35.36
Bra025185.1-P	Field mustard	nucleus	31.61	35.2
PGSC0003DMT400027957	Potato	nucleus	24.67	34.5
KRH31365	Soybean	nucleus	13.88	28.92
HORVU5Hr1G081420.2	Barley	mitochondrion	13.15	25.87
HORVU1Hr1G000530.2	Barley	nucleus	15.66	17.88
HORVU2Hr1G071240.13	Barley	nucleus	20.83	15.0
HORVU7Hr1G000370.12	Barley	nucleus, plastid	19.35	14.75

Protein Annotations

Gene3D:3.30.70.330	MapMan:35.1	InterPro:EAR1_like_RRM3	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0005488	EnsemblPlantsGene:HORVU3Hr1G091930	EnsemblPlants:HORVU3Hr1G091930.1	InterPro:IPR000504	InterPro:IPR012677	UniProt:M0XJL1
InterPro:Mei2-like	InterPro:Mei2-like_Rrm_C	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFAM:PF04059	PFscan:PS50102
PANTHER:PTHR45087	InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360	SUPFAM:SSF54928	UniParc:UPI0002965543
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chrchr3H:+:636690662..636694792

Molecular Weight (calculated)

72666.6 Da

IEP (calculated)

7.366

GRAVY (calculated)

-0.492

Length

677 amino acids

Sequence
(BLAST)

001: MDGVGGGGGG GGMGGMPGAP QNILDAGAQE YYPTAGAPYP PPPFLSLQHQ LYCPPPFPVM PPPMAMPMPM PPPPQIGLPV PTVATTPVDG PAGRAVVLSL
101: LPPHTPELEV ARAMAAFGDV RTVDAPALAS EGVATVHFFD LRSAENAVTA VREQHMRQQC RLSQLYAAPA AWPPQPPAWD WHQDDCRGLV LGQAVWAHFT
201: AASTLPDDGA NRGSLVVLNS LPDVSVSELR QAFEAYGPLK DVRESAQRPN HKFVEFFDTR DAARALAELN GRDFFGHRLI LEFTRPSIPG IRRRGFVSPR
301: PTAPTPPRLQ TAWRPLPAPA KQPPPPSSST RTGKASGEVV TIGRSSSKSN AADRCKGGTS HERKGKGKGG KKPTIVVDTT SSTPASACET TATASASGKQ
401: QLQKGVVRVG SWRGPKSWRG GWETRFEFKQ QGAASSDTNA ATAAAADTDT QEPETRTTVM IRNIPNKYSQ KLLLNMLDNH CIEYNKKIEA GEGAGEPLSS
501: YDFLYLPIDF NNKCNVGYGF VNLTTPEAAV RLYKAFHKQP WEVYNSRKIC QVTYARVQGL EALKDHFKNS KFPCDSDEYL PVVFSPPRDG RRLTDPELLV
601: PRTPMPSPSP SPSSPRKGQA ASVDPLALEL MAPPSSSGDG ASSTMSTHAD EDVHGASSNE DDDGGLGEEL QRLGYTD

Best Arabidopsis Sequence Match ( AT3G26120.1 )
(BLAST)

001: MEDSRLFPFV GNLDPRAQEF IPFNPISSGF HFPYTPPPPQ LPPPLPPSSY GLSPTEPRVF TFFNIPPHPM MFSPPPPQPP PPPPRPCFNG VSAAQRLPLP
101: SNTPTRSLSL ISVPRDVTES TVRRDLEVYG DVRGVQMERI SEGIVTVHFY DIRDAKRAVR EVCGRHMQQQ ARGGSVWSSP STSSARGFVS GRPVWAQFVV
201: PATSAVPGGC NQGTLVIFNL DPEVSSITLR QIFQVYGPIK ELRETPYKKH QRFVEFYDVR DAARAFDRMN GKEIGGKQVV IEFSRPGGIK NRFRSSRQPQ
301: LPFQPLREPP ILIPPLRRPV SFIKDKNKNV SPKNGVIAVD ASMRSLCIID ADDNKTRGTR GTESECAETK SKNVAKWGKK RQMKNMELSQ FLISEETMED
401: PSCRDPRTTL MIKNIPNKYS QKLLLDMLDK HCIHINEAIT EEHNKHESHH QPYSSYDFVY LPMDFNNKCN VGYGFVNMTS PEAAWRFYKA FHGQRWEVFN
501: SHKICQITYA RVQGLEDLKE HFKSSKFPCE AELYLPVVFS PPRDGKQLTE PVSINITING CTRLNHNHFE QTVGQDHFLS GSCCDSDHDN SHEDGFSGSS
601: VDCGRSITVE GETSF

Arabidopsis Description

TEL1Terminal EAR1-like 1 [Source:UniProtKB/TrEMBL;Acc:F4JBE2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.