CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra036347.1-P	Field mustard	plastid	87.91	98.9
CDX99727	Canola	nucleus	97.06	98.51
AT3G26120.1	Thale cress	nucleus	81.7	81.3
CDX83589	Canola	nucleus	77.12	81.24
CDY13612	Canola	nucleus	79.25	79.77
KRH31364	Soybean	cytosol, nucleus	17.32	61.27
CDY01848	Canola	plastid	41.5	50.6
CDY56219	Canola	plastid	41.18	47.91
Solyc05g013930.1.1	Tomato	nucleus	46.73	45.11
KRG97510	Soybean	nucleus	39.54	44.9
PGSC0003DMT400027957	Potato	nucleus	33.5	42.36
GSMUA_Achr7P02820_001	Banana	cytosol, nucleus, plastid	34.48	41.78
VIT_01s0137g00320.t01	Wine grape	nucleus	43.79	40.73
VIT_14s0219g00270.t01	Wine grape	plastid	37.09	40.61
GSMUA_Achr8P01280_001	Banana	cytoskeleton, cytosol, nucleus	36.11	38.5
KRH31365	Soybean	nucleus	20.26	38.15
Zm00001d042445_P001	Maize	nucleus	37.58	34.64
EES01930	Sorghum	nucleus	37.58	34.53
GSMUA_Achr8P32080_001	Banana	nucleus	38.4	34.01
Os01t0907900-01	Rice	nucleus	37.25	33.38
TraesCS3B01G447800.1	Wheat	nucleus	36.11	32.69
HORVU3Hr1G091930.1	Barley	nucleus	36.11	32.64
TraesCS3D01G407900.1	Wheat	nucleus	36.11	32.36
TraesCS3A01G413400.1	Wheat	nucleus	35.78	32.21
CDY44647	Canola	nucleus, plastid	12.25	31.38
CDY62093	Canola	nucleus, plastid	12.42	30.4
CDY14020	Canola	plastid	12.58	27.5
CDY40768	Canola	nucleus	12.25	24.83
CDY61671	Canola	nucleus	23.2	21.39
CDX78826	Canola	nucleus	23.2	21.35
CDY15631	Canola	nucleus	23.04	19.16
CDX94663	Canola	nucleus	22.39	18.59
CDY48336	Canola	nucleus	22.88	18.11
CDX99820	Canola	nucleus	23.04	17.8
CDX83512	Canola	nucleus	22.06	17.15
CDX79841	Canola	nucleus	21.57	17.03
CDY42812	Canola	nucleus	21.73	16.77
CDY42813	Canola	nucleus	21.9	16.4
CDY60197	Canola	endoplasmic reticulum, plasma membrane	21.41	16.21
CDX70025	Canola	nucleus	21.08	14.53
CDY30687	Canola	nucleus	20.26	14.5
CDX98985	Canola	nucleus	20.75	14.35
CDY30686	Canola	nucleus	11.93	13.77
CDY00238	Canola	nucleus	19.12	12.8
CDX86947	Canola	nucleus	18.95	12.76
CDY71762	Canola	nucleus	1.96	5.0
CDY72437	Canola	nucleus	1.96	4.78

Protein Annotations

Gene3D:3.30.70.330	MapMan:35.1	GO:A0A078HQW1	UniProt:A0A078HQW1	EnsemblPlants:CDY40990	ProteinID:CDY40990
ProteinID:CDY40990.1	InterPro:EAR1_like_RRM3	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488
EnsemblPlantsGene:GSBRNA2T00072267001	InterPro:IPR000504	InterPro:IPR012677	InterPro:Mei2-like	InterPro:Mei2-like_Rrm_C	InterPro:Nucleotide-bd_a/b_plait_sf
PFAM:PF00076	PFAM:PF04059	PFscan:PS50102	PANTHER:PTHR45087	InterPro:RBD_domain_sf	InterPro:RRM_dom
SMART:SM00360	SUPFAM:SSF54928	UniParc:UPI0004EE9F70	SEG:seg	:	:

Description

BnaA02g27800DBnaA02g27800D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HQW1]

Coordinates

chrLK032487:+:145175..147994

Molecular Weight (calculated)

68579.7 Da

IEP (calculated)

7.896

GRAVY (calculated)

-0.484

Length

612 amino acids

Sequence
(BLAST)

001: MEDSRAFPLD PRAQEFVPLN PISSHFYFPY TSPPRPPPFP TLPPSSYGLS PTVPRVFTFF NLPPHPMMFS PPPPPPPPPP PPRPYFNGVS AVQRLPFQSK
101: SPTRSLSLIS VPRDVTESTV RRDLEVFGDV RGVQMERISE GIVTVHFYDL RDAKKAVREI CGRHMQHQAK VGGSGSVWSL PSSSSPVRGF VSGRPVWAQF
201: VVPATSAVPN GCNQGTLVVF NLDPEVSSIA LRQIFQVYGP IKELRETPYK KHQRFVEFYD VRDAAKALDG MNGEEICGKQ VVIEYSRPGG IKNKFRSLRQ
301: PHVLFQPFQP AQPPPILAPP MRQPLTLMKD KNKNVSPNNG VSVVEASMGS LCINDNEHNK IRGAESETKS KNVAKWGKKR HMKSMELSQF LISEETMDDP
401: SCRDPRTTLM IKNIPNKYSQ KLLLNMLDNH CVHINEAITE GKDEHEAHHQ PFSSYDFVYL PMDFNNKCNV GYGFVNMTSP EAAWRLYKAF HLQRWEVFNS
501: QKICQITYAR VQGLEDLKEH FKSAKFPCEA ELYLPVVFTP PRDGKQLTEP VSININGCTG LDSKHLEPMD GQDLSVSGSC CGSDHYNSQE DDFSSSSIDG
601: GQGLTVVGET SF

Best Arabidopsis Sequence Match ( AT3G26120.1 )
(BLAST)

001: MEDSRLFPFV GNLDPRAQEF IPFNPISSGF HFPYTPPPPQ LPPPLPPSSY GLSPTEPRVF TFFNIPPHPM MFSPPPPQPP PPPPRPCFNG VSAAQRLPLP
101: SNTPTRSLSL ISVPRDVTES TVRRDLEVYG DVRGVQMERI SEGIVTVHFY DIRDAKRAVR EVCGRHMQQQ ARGGSVWSSP STSSARGFVS GRPVWAQFVV
201: PATSAVPGGC NQGTLVIFNL DPEVSSITLR QIFQVYGPIK ELRETPYKKH QRFVEFYDVR DAARAFDRMN GKEIGGKQVV IEFSRPGGIK NRFRSSRQPQ
301: LPFQPLREPP ILIPPLRRPV SFIKDKNKNV SPKNGVIAVD ASMRSLCIID ADDNKTRGTR GTESECAETK SKNVAKWGKK RQMKNMELSQ FLISEETMED
401: PSCRDPRTTL MIKNIPNKYS QKLLLDMLDK HCIHINEAIT EEHNKHESHH QPYSSYDFVY LPMDFNNKCN VGYGFVNMTS PEAAWRFYKA FHGQRWEVFN
501: SHKICQITYA RVQGLEDLKE HFKSSKFPCE AELYLPVVFS PPRDGKQLTE PVSINITING CTRLNHNHFE QTVGQDHFLS GSCCDSDHDN SHEDGFSGSS
601: VDCGRSITVE GETSF

Arabidopsis Description

TEL1Terminal EAR1-like 1 [Source:UniProtKB/TrEMBL;Acc:F4JBE2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.