CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra013285.1-P	Field mustard	nucleus	96.39	96.54
CDY61671	Canola	nucleus	94.89	95.03
CDX94663	Canola	nucleus	59.4	53.6
CDY15631	Canola	nucleus	58.65	52.99
CDY48336	Canola	nucleus	61.5	52.91
CDX99820	Canola	nucleus	61.95	52.02
CDX83512	Canola	nucleus	44.81	37.87
CDY42812	Canola	nucleus	44.66	37.45
CDX79841	Canola	nucleus	43.31	37.16
CDY42813	Canola	nucleus	44.66	36.35
CDY60197	Canola	endoplasmic reticulum, plasma membrane	43.91	36.14
CDY30687	Canola	nucleus	38.8	30.18
CDX98985	Canola	nucleus	38.95	29.27
CDX70025	Canola	nucleus	38.2	28.6
CDX86947	Canola	nucleus	37.59	27.5
CDY00238	Canola	nucleus	37.59	27.35
CDY01848	Canola	plastid	20.3	26.89
CDY30686	Canola	nucleus	21.35	26.79
CDY56219	Canola	plastid	19.85	25.1
CDX83589	Canola	nucleus	21.05	24.1
CDY13612	Canola	nucleus	21.5	23.52
CDX99727	Canola	nucleus	21.05	23.22
CDY40990	Canola	nucleus	21.35	23.2
CDY14020	Canola	plastid	9.17	21.79
CDY71762	Canola	nucleus	7.82	21.67
CDY72437	Canola	nucleus	7.52	19.92
CDY44647	Canola	nucleus, plastid	7.07	19.67
CDY40768	Canola	nucleus	8.87	19.54
CDY62093	Canola	nucleus, plastid	7.22	19.2

Protein Annotations

Gene3D:3.30.70.330	MapMan:35.1	GO:A0A078CNN4	EnsemblPlants:CDX78826	ProteinID:CDX78826	ProteinID:CDX78826.1
GO:GO:0003674	GO:GO:0003676	GO:GO:0005488	EnsemblPlantsGene:GSBRNA2T00131298001	InterPro:IPR000504	InterPro:IPR012677
InterPro:MEI2-like_RRM3	InterPro:MEI2_like_RRM1	InterPro:Mei2-like_Rrm_C	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFAM:PF04059
PFscan:PS50102	PANTHER:PTHR44127	PANTHER:PTHR44127:SF5	InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360
SUPFAM:SSF54928	UniParc:UPI0004EECD01	SEG:seg	:	:	:

Description

BnaA01g08930D

Coordinates

chrLK031816:+:291907..295275

Molecular Weight (calculated)

73932.5 Da

IEP (calculated)

6.776

GRAVY (calculated)

-0.547

Length

665 amino acids

Sequence
(BLAST)

001: MNIPNGDFSN ASSDNTSFFS TSLPLLPQQN LNPLDQIASG LNHFNDDHDS HPMDEEQLLA GLMDEINLTS LPNTLDDLEE YDLFGSGGGL ELESDLPRTS
101: FADSKTANGI FQNIAGEHPY GEHPSRTLFV RNINSTVDDS ELRAIFEQHG DIRTLYTACK HRGFVMVSYY DIRASRAAMR ALQSKLLKGR KLDIHFSIPK
201: DNPSEKDVNQ GTLVVFNLAP SVSNKDLENI FGAYGEIKEI RETPNKRHHK FVEFFDVRSA ESALKALNRT DIAGKRIKLE HSRPGGARRN MMLQMNPEYE
301: QDDSRSYLNL SDSPLASSPA GNYWGNSPVD HSPLQSLSRS PLSPTLSSIL NSQRVSHLDH LFPTSHKASG YQQTQSYGTA SSYGSLNSLS GSEFLWGSPS
401: SSLWPMNHPF SSNGKAHMFP YSALNGSNHV GSAPSGLFRR SSETSSMGSS AFRGASGNVA PRNMREAGSP SFKMVSSPRH SQLFTGSVSS YQWPVATTAS
501: IDGNNMNQVD SKKQFQLDLS KIMSGEDLRT TLMIKNIPNK YTRKMLLAAI DETNRGTYDF LYLPIDFKNK CNVGYAFINM VSPTFIIALY EAFDGKKWDK
601: FNSEKVASLA YARIQGKTAL MAHFQNSSLM NEDKRCHPIV FDGSELSYPF IMDMEHSQEQ STHRS

Best Arabidopsis Sequence Match ( AT1G29400.3 )
(BLAST)

001: MDIPHEAEAG AWGILPGFGR HHHPSSDATL FSSSLPVFPR GKLQLSDNRD GFSLIDDTAV SRTNKFNESA DDFESHSIGN LLPDEEDLLT GMMDDLDLGE
101: LPDADDYDLF GSGGGMELDA DFRDNLSMSG PPRLSLSSLG GNAIPQFNIP NGAGTVAGEH PYGEHPSRTL FVRNINSNVE DSELTALFEQ YGDIRTLYTT
201: CKHRGFVMIS YYDIRSARMA MRSLQNKPLR RRKLDIHFSI PKDNPSEKDM NQGTLVVFNL DPSISNDDLH GIFGAHGEIK EIRETPHKRH HKFVEFYDVR
301: GAEAALKALN RCEIAGKRIK VEPSRPGGAR RSLMLQLNQD LENDDLHYLP MIGSPMANSP PMQGNWPLNS PVEGSPLQSV LSRSPVFGLS PTRNGHLSGL
401: ASALNSQGPS SKLAPIGRGQ IGSNGFQQSS HLFQEPKMDN KYTGNLSPSG PLISNGGGIE TLSGSEFLWG SPNARSEPSS SSVWSTSSTG NPLFSTRVDR
501: SVPFPHQHQN QSRSHHHFHV GSAPSGVPLE KHFGFVPESS KDALFMNTVG LQGMSGMGLN GGSFSSKMAN NGIINSGSMA ENGFSSYRMM SSPRFSPMFL
601: SSGLNPGRFA SGFDSLYENG RPRRVENNSN QVESRKQFQL DLEKILNGED SRTTLMIKNI PNKYTSKMLL AAIDEKNQGT YNFLYLPIDF KNKCNVGYAF
701: INMLNPELII PFYEAFNGKK WEKFNSEKVA SLAYARIQGK SALIAHFQNS SLMNEDMRCR PIIFDTPNNP ESVEQVVDEE SKNMDLLDSQ LSDDDGRERS

Arabidopsis Description

ML5Protein MEI2-like 5 [Source:UniProtKB/Swiss-Prot;Acc:Q8VWF5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.