Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY48336 | Canola | nucleus | 96.21 | 98.58 |
| Bra032316.1-P | Field mustard | nucleus | 98.48 | 98.48 |
| CDY15631 | Canola | nucleus | 80.18 | 86.28 |
| CDX94663 | Canola | nucleus | 79.8 | 85.75 |
| AT1G29400.3 | Thale cress | nucleus | 85.35 | 84.5 |
| CDX78826 | Canola | nucleus | 52.02 | 61.95 |
| CDY61671 | Canola | nucleus | 51.52 | 61.45 |
| CDX83512 | Canola | nucleus | 41.04 | 41.3 |
| CDY42812 | Canola | nucleus | 40.66 | 40.61 |
| CDX79841 | Canola | nucleus | 39.39 | 40.26 |
| CDY42813 | Canola | nucleus | 41.29 | 40.02 |
| CDY60197 | Canola | endoplasmic reticulum, plasma membrane | 39.39 | 38.61 |
| CDY30687 | Canola | nucleus | 37.5 | 34.74 |
| CDX98985 | Canola | nucleus | 36.99 | 33.11 |
| CDX70025 | Canola | nucleus | 36.62 | 32.66 |
| CDY00238 | Canola | nucleus | 37.25 | 32.28 |
| CDX86947 | Canola | nucleus | 36.99 | 32.23 |
| CDY30686 | Canola | nucleus | 20.83 | 31.13 |
| CDY71762 | Canola | nucleus | 8.71 | 28.75 |
| CDY01848 | Canola | plastid | 17.05 | 26.89 |
| CDY72437 | Canola | nucleus | 8.46 | 26.69 |
| CDY56219 | Canola | plastid | 16.79 | 25.29 |
| CDX83589 | Canola | nucleus | 17.55 | 23.92 |
| CDY13612 | Canola | nucleus | 17.93 | 23.36 |
| CDY14020 | Canola | plastid | 8.21 | 23.21 |
| CDY40990 | Canola | nucleus | 17.8 | 23.04 |
| CDX99727 | Canola | nucleus | 17.42 | 22.89 |
| CDY40768 | Canola | nucleus | 7.95 | 20.86 |
| CDY44647 | Canola | nucleus, plastid | 5.81 | 19.25 |
| CDY62093 | Canola | nucleus, plastid | 6.06 | 19.2 |
Protein Annotations
| Gene3D:3.30.70.330 | MapMan:35.1 | GO:A0A078ECK3 | EnsemblPlants:CDX99820 | ProteinID:CDX99820 | ProteinID:CDX99820.1 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 | EnsemblPlantsGene:GSBRNA2T00108523001 | InterPro:IPR000504 | InterPro:IPR012677 |
| InterPro:MEI2-like_RRM3 | InterPro:MEI2_like_RRM1 | InterPro:Mei2-like_Rrm_C | InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 | PFAM:PF04059 |
| PFscan:PS50102 | PANTHER:PTHR44127 | PANTHER:PTHR44127:SF5 | InterPro:RBD_domain_sf | InterPro:RRM_dom | SMART:SM00360 |
| SUPFAM:SSF54928 | UniParc:UPI0004EF2123 | SEG:seg | : | : | : |
Description
BnaC05g22420D
Coordinates
chrLK031914:-:322385..326976
Molecular Weight (calculated)
87530.9 Da
IEP (calculated)
6.542
GRAVY (calculated)
-0.566
Length
792 amino acids
Sequence
(BLAST)
(BLAST)
001: MDIPQDVAGA WGIPSGMGRH RHLPSDATLF SASLPVLPHG KLQSSDSRDG FPFIDDAAAS RPIRESVDDI ESHSIGNMLP DEDDLLTGMM DDLDLTELPP
101: DSADDYDLFG SGGGMELDAD FRDGLSMNCG PPRLSISSAV PQFNVQNGAA GTVAGEHPYG EHPSRTLFVR NINSNVEDSE LKTLFEQYGD IRTLYTTCKH
201: RGFVMISYYD IRAARMAMRS LQNKPLRRRK LDIHFSIPKD NPSEKDMNQG TLVVFNLDPS ITNDDLHGIF GAHGEIKEIR ETPHKRHHKF VEFYDVRAAE
301: AALKALNRCE IAGKRIKVEP SRPGGARRSL MLQLNQELEN DDLHYLPLLG SPMANSPPSN WLQMNSPVEG SPLQSVLSRS PVFGVSPTRN SHLSGLASAL
401: NSQGPSSKLA PIGRSPVASN VFQQSSHLFQ EPKPDNKYTG NLSPSGPLIS NGGGIETLSG SEFLWGSPNT RSEPSNSSVW STSSTGVPFS SARVDRSVPF
501: LHHPQNRSHH PHHHHHLHVG SAPSNVPLEK HFGFFPESSK DTMFMNSSGM GGGLNGGSFP SRMANHGIMN PENGFSSYRM MSSPRFSPMF LSSGLNPGRF
601: PAGVDGLYEN GRPRRVENSS SQVESRKQFQ LDLEKIMNGD DSRTTLMIKN IPNKYTSKML LAAIDEKNQG TYNFLYLPID FKNKCNVGYA FINMLSPDLI
701: IPFYEAFNGK KWEKFNSEKV ASLAYARIQG KTALIAHFQN SSLMNEDMRC RPIIFDTPNN SDSVEQVIVK ETKNGDFFDS EVNDDDDGKE KR
101: DSADDYDLFG SGGGMELDAD FRDGLSMNCG PPRLSISSAV PQFNVQNGAA GTVAGEHPYG EHPSRTLFVR NINSNVEDSE LKTLFEQYGD IRTLYTTCKH
201: RGFVMISYYD IRAARMAMRS LQNKPLRRRK LDIHFSIPKD NPSEKDMNQG TLVVFNLDPS ITNDDLHGIF GAHGEIKEIR ETPHKRHHKF VEFYDVRAAE
301: AALKALNRCE IAGKRIKVEP SRPGGARRSL MLQLNQELEN DDLHYLPLLG SPMANSPPSN WLQMNSPVEG SPLQSVLSRS PVFGVSPTRN SHLSGLASAL
401: NSQGPSSKLA PIGRSPVASN VFQQSSHLFQ EPKPDNKYTG NLSPSGPLIS NGGGIETLSG SEFLWGSPNT RSEPSNSSVW STSSTGVPFS SARVDRSVPF
501: LHHPQNRSHH PHHHHHLHVG SAPSNVPLEK HFGFFPESSK DTMFMNSSGM GGGLNGGSFP SRMANHGIMN PENGFSSYRM MSSPRFSPMF LSSGLNPGRF
601: PAGVDGLYEN GRPRRVENSS SQVESRKQFQ LDLEKIMNGD DSRTTLMIKN IPNKYTSKML LAAIDEKNQG TYNFLYLPID FKNKCNVGYA FINMLSPDLI
701: IPFYEAFNGK KWEKFNSEKV ASLAYARIQG KTALIAHFQN SSLMNEDMRC RPIIFDTPNN SDSVEQVIVK ETKNGDFFDS EVNDDDDGKE KR
001: MDIPHEAEAG AWGILPGFGR HHHPSSDATL FSSSLPVFPR GKLQLSDNRD GFSLIDDTAV SRTNKFNESA DDFESHSIGN LLPDEEDLLT GMMDDLDLGE
101: LPDADDYDLF GSGGGMELDA DFRDNLSMSG PPRLSLSSLG GNAIPQFNIP NGAGTVAGEH PYGEHPSRTL FVRNINSNVE DSELTALFEQ YGDIRTLYTT
201: CKHRGFVMIS YYDIRSARMA MRSLQNKPLR RRKLDIHFSI PKDNPSEKDM NQGTLVVFNL DPSISNDDLH GIFGAHGEIK EIRETPHKRH HKFVEFYDVR
301: GAEAALKALN RCEIAGKRIK VEPSRPGGAR RSLMLQLNQD LENDDLHYLP MIGSPMANSP PMQGNWPLNS PVEGSPLQSV LSRSPVFGLS PTRNGHLSGL
401: ASALNSQGPS SKLAPIGRGQ IGSNGFQQSS HLFQEPKMDN KYTGNLSPSG PLISNGGGIE TLSGSEFLWG SPNARSEPSS SSVWSTSSTG NPLFSTRVDR
501: SVPFPHQHQN QSRSHHHFHV GSAPSGVPLE KHFGFVPESS KDALFMNTVG LQGMSGMGLN GGSFSSKMAN NGIINSGSMA ENGFSSYRMM SSPRFSPMFL
601: SSGLNPGRFA SGFDSLYENG RPRRVENNSN QVESRKQFQL DLEKILNGED SRTTLMIKNI PNKYTSKMLL AAIDEKNQGT YNFLYLPIDF KNKCNVGYAF
701: INMLNPELII PFYEAFNGKK WEKFNSEKVA SLAYARIQGK SALIAHFQNS SLMNEDMRCR PIIFDTPNNP ESVEQVVDEE SKNMDLLDSQ LSDDDGRERS
101: LPDADDYDLF GSGGGMELDA DFRDNLSMSG PPRLSLSSLG GNAIPQFNIP NGAGTVAGEH PYGEHPSRTL FVRNINSNVE DSELTALFEQ YGDIRTLYTT
201: CKHRGFVMIS YYDIRSARMA MRSLQNKPLR RRKLDIHFSI PKDNPSEKDM NQGTLVVFNL DPSISNDDLH GIFGAHGEIK EIRETPHKRH HKFVEFYDVR
301: GAEAALKALN RCEIAGKRIK VEPSRPGGAR RSLMLQLNQD LENDDLHYLP MIGSPMANSP PMQGNWPLNS PVEGSPLQSV LSRSPVFGLS PTRNGHLSGL
401: ASALNSQGPS SKLAPIGRGQ IGSNGFQQSS HLFQEPKMDN KYTGNLSPSG PLISNGGGIE TLSGSEFLWG SPNARSEPSS SSVWSTSSTG NPLFSTRVDR
501: SVPFPHQHQN QSRSHHHFHV GSAPSGVPLE KHFGFVPESS KDALFMNTVG LQGMSGMGLN GGSFSSKMAN NGIINSGSMA ENGFSSYRMM SSPRFSPMFL
601: SSGLNPGRFA SGFDSLYENG RPRRVENNSN QVESRKQFQL DLEKILNGED SRTTLMIKNI PNKYTSKMLL AAIDEKNQGT YNFLYLPIDF KNKCNVGYAF
701: INMLNPELII PFYEAFNGKK WEKFNSEKVA SLAYARIQGK SALIAHFQNS SLMNEDMRCR PIIFDTPNNP ESVEQVVDEE SKNMDLLDSQ LSDDDGRERS
Arabidopsis Description
ML5Protein MEI2-like 5 [Source:UniProtKB/Swiss-Prot;Acc:Q8VWF5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.