Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra032316.1-P | Field mustard | nucleus | 99.48 | 97.1 |
| CDX99820 | Canola | nucleus | 98.58 | 96.21 |
| CDY15631 | Canola | nucleus | 81.37 | 85.46 |
| CDX94663 | Canola | nucleus | 81.24 | 85.21 |
| AT1G29400.3 | Thale cress | nucleus | 85.77 | 82.88 |
| CDX78826 | Canola | nucleus | 52.91 | 61.5 |
| CDY61671 | Canola | nucleus | 52.39 | 60.99 |
| CDX83512 | Canola | nucleus | 41.79 | 41.04 |
| CDY42812 | Canola | nucleus | 41.4 | 40.35 |
| CDX79841 | Canola | nucleus | 40.1 | 40.0 |
| CDY42813 | Canola | nucleus | 42.04 | 39.78 |
| CDY60197 | Canola | endoplasmic reticulum, plasma membrane | 39.97 | 38.24 |
| CDY30687 | Canola | nucleus | 38.03 | 34.39 |
| CDX98985 | Canola | nucleus | 37.13 | 32.43 |
| CDX70025 | Canola | nucleus | 36.74 | 31.98 |
| CDY00238 | Canola | nucleus | 37.77 | 31.95 |
| CDX86947 | Canola | nucleus | 37.52 | 31.9 |
| CDY30686 | Canola | nucleus | 20.96 | 30.57 |
| CDY71762 | Canola | nucleus | 8.93 | 28.75 |
| CDY01848 | Canola | plastid | 17.46 | 26.89 |
| CDY72437 | Canola | nucleus | 8.67 | 26.69 |
| CDY56219 | Canola | plastid | 17.21 | 25.29 |
| CDX83589 | Canola | nucleus | 17.85 | 23.75 |
| CDY14020 | Canola | plastid | 8.41 | 23.21 |
| CDY13612 | Canola | nucleus | 18.24 | 23.19 |
| CDY40990 | Canola | nucleus | 18.11 | 22.88 |
| CDX99727 | Canola | nucleus | 17.72 | 22.72 |
| CDY40768 | Canola | nucleus | 8.15 | 20.86 |
| CDY44647 | Canola | nucleus, plastid | 5.95 | 19.25 |
| CDY62093 | Canola | nucleus, plastid | 6.21 | 19.2 |
Protein Annotations
| Gene3D:3.30.70.330 | MapMan:35.1 | GO:A0A078IE96 | UniProt:A0A078IE96 | EnsemblPlants:CDY48336 | ProteinID:CDY48336 |
| ProteinID:CDY48336.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 | EnsemblPlantsGene:GSBRNA2T00089308001 |
| InterPro:IPR000504 | InterPro:IPR012677 | InterPro:MEI2-like_RRM3 | InterPro:MEI2_like_RRM1 | InterPro:Mei2-like_Rrm_C | InterPro:Nucleotide-bd_a/b_plait_sf |
| PFAM:PF00076 | PFAM:PF04059 | PFscan:PS50102 | PANTHER:PTHR44127 | PANTHER:PTHR44127:SF5 | InterPro:RBD_domain_sf |
| InterPro:RRM_dom | SMART:SM00360 | SUPFAM:SSF54928 | UniParc:UPI0004EDB833 | SEG:seg | : |
Description
BnaA09g26850DBnaA09g26850D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IE96]
Coordinates
chrLK032766:-:84760..89351
Molecular Weight (calculated)
85294.2 Da
IEP (calculated)
6.276
GRAVY (calculated)
-0.549
Length
773 amino acids
Sequence
(BLAST)
(BLAST)
001: MDIPQDVAGA WGIPSGMGRH RHLPSDATLF SASLPVLPHG KLQSSDSRDG FPFIDDAAAS RPVHESVDDI ESHSIGNMLP DEDDLLTGMM DDLDLTELPP
101: DSADDYDLFG SGGGMELDAD FRDGLSMNGG PPRLSISSAV PQFNVQNGAG TVAGEHPYGE HPSRTLFVRN INSNVEDSEL KTLFEQYGDI RTLYTTCKHR
201: GFVMISYYDI RAARMAMRSL QNKPLRRRKL DIHFSIPKDN PSEKDMNQGT LVVFNLDPSI TNDDLHGIFG AHGEIKEIRE TPHKRHHKFV EFYDVRAAEA
301: ALKALNRCEI AGKRIKVEPS RPGGARRSLM LQLNQELEND DLHYLPLLGS PMANSPPSNW LQMNSPVEGS PLQSVLSRSP VFGVSPTRNS HLSGLASALN
401: SQGPSSKLAP IGRSPVASNV FQQSSHLFQE PKPDNKYTGN LSPSGPLISN GGGIETLSGS EFLWGSPNTR SEPSNSSVWS TSSTGVPFSS ARVDRSVPFL
501: HQTQNRSHHP HHHHHLHVGS APSNVPLEKH FGFFPESSKD TMFMNSSGMG GGLNGVSFPM MSSPRFSPMF LSSGLNPGRF PAGVDGLYEN GRPRRVENSS
601: SQVESRKQFQ LDLEKIMNGD DSRTTLMIKN IPNKYTSKML LAAIDEKNQG TYNFLYLPID FKNKCNVGYA FINMLSPDLI IPFYEAFNGK KWEKFNSEKV
701: ASLAYARIQG KTALIAHFQN SSLMNEDMRC RPIIFDTPNS SDSVEQVIVK ETKNGDLFDS EVNDDEDDGR EKS
101: DSADDYDLFG SGGGMELDAD FRDGLSMNGG PPRLSISSAV PQFNVQNGAG TVAGEHPYGE HPSRTLFVRN INSNVEDSEL KTLFEQYGDI RTLYTTCKHR
201: GFVMISYYDI RAARMAMRSL QNKPLRRRKL DIHFSIPKDN PSEKDMNQGT LVVFNLDPSI TNDDLHGIFG AHGEIKEIRE TPHKRHHKFV EFYDVRAAEA
301: ALKALNRCEI AGKRIKVEPS RPGGARRSLM LQLNQELEND DLHYLPLLGS PMANSPPSNW LQMNSPVEGS PLQSVLSRSP VFGVSPTRNS HLSGLASALN
401: SQGPSSKLAP IGRSPVASNV FQQSSHLFQE PKPDNKYTGN LSPSGPLISN GGGIETLSGS EFLWGSPNTR SEPSNSSVWS TSSTGVPFSS ARVDRSVPFL
501: HQTQNRSHHP HHHHHLHVGS APSNVPLEKH FGFFPESSKD TMFMNSSGMG GGLNGVSFPM MSSPRFSPMF LSSGLNPGRF PAGVDGLYEN GRPRRVENSS
601: SQVESRKQFQ LDLEKIMNGD DSRTTLMIKN IPNKYTSKML LAAIDEKNQG TYNFLYLPID FKNKCNVGYA FINMLSPDLI IPFYEAFNGK KWEKFNSEKV
701: ASLAYARIQG KTALIAHFQN SSLMNEDMRC RPIIFDTPNS SDSVEQVIVK ETKNGDLFDS EVNDDEDDGR EKS
001: MDIPHEAEAG AWGILPGFGR HHHPSSDATL FSSSLPVFPR GKLQLSDNRD GFSLIDDTAV SRTNKFNESA DDFESHSIGN LLPDEEDLLT GMMDDLDLGE
101: LPDADDYDLF GSGGGMELDA DFRDNLSMSG PPRLSLSSLG GNAIPQFNIP NGAGTVAGEH PYGEHPSRTL FVRNINSNVE DSELTALFEQ YGDIRTLYTT
201: CKHRGFVMIS YYDIRSARMA MRSLQNKPLR RRKLDIHFSI PKDNPSEKDM NQGTLVVFNL DPSISNDDLH GIFGAHGEIK EIRETPHKRH HKFVEFYDVR
301: GAEAALKALN RCEIAGKRIK VEPSRPGGAR RSLMLQLNQD LENDDLHYLP MIGSPMANSP PMQGNWPLNS PVEGSPLQSV LSRSPVFGLS PTRNGHLSGL
401: ASALNSQGPS SKLAPIGRGQ IGSNGFQQSS HLFQEPKMDN KYTGNLSPSG PLISNGGGIE TLSGSEFLWG SPNARSEPSS SSVWSTSSTG NPLFSTRVDR
501: SVPFPHQHQN QSRSHHHFHV GSAPSGVPLE KHFGFVPESS KDALFMNTVG LQGMSGMGLN GGSFSSKMAN NGIINSGSMA ENGFSSYRMM SSPRFSPMFL
601: SSGLNPGRFA SGFDSLYENG RPRRVENNSN QVESRKQFQL DLEKILNGED SRTTLMIKNI PNKYTSKMLL AAIDEKNQGT YNFLYLPIDF KNKCNVGYAF
701: INMLNPELII PFYEAFNGKK WEKFNSEKVA SLAYARIQGK SALIAHFQNS SLMNEDMRCR PIIFDTPNNP ESVEQVVDEE SKNMDLLDSQ LSDDDGRERS
101: LPDADDYDLF GSGGGMELDA DFRDNLSMSG PPRLSLSSLG GNAIPQFNIP NGAGTVAGEH PYGEHPSRTL FVRNINSNVE DSELTALFEQ YGDIRTLYTT
201: CKHRGFVMIS YYDIRSARMA MRSLQNKPLR RRKLDIHFSI PKDNPSEKDM NQGTLVVFNL DPSISNDDLH GIFGAHGEIK EIRETPHKRH HKFVEFYDVR
301: GAEAALKALN RCEIAGKRIK VEPSRPGGAR RSLMLQLNQD LENDDLHYLP MIGSPMANSP PMQGNWPLNS PVEGSPLQSV LSRSPVFGLS PTRNGHLSGL
401: ASALNSQGPS SKLAPIGRGQ IGSNGFQQSS HLFQEPKMDN KYTGNLSPSG PLISNGGGIE TLSGSEFLWG SPNARSEPSS SSVWSTSSTG NPLFSTRVDR
501: SVPFPHQHQN QSRSHHHFHV GSAPSGVPLE KHFGFVPESS KDALFMNTVG LQGMSGMGLN GGSFSSKMAN NGIINSGSMA ENGFSSYRMM SSPRFSPMFL
601: SSGLNPGRFA SGFDSLYENG RPRRVENNSN QVESRKQFQL DLEKILNGED SRTTLMIKNI PNKYTSKMLL AAIDEKNQGT YNFLYLPIDF KNKCNVGYAF
701: INMLNPELII PFYEAFNGKK WEKFNSEKVA SLAYARIQGK SALIAHFQNS SLMNEDMRCR PIIFDTPNNP ESVEQVVDEE SKNMDLLDSQ LSDDDGRERS
Arabidopsis Description
ML5Protein MEI2-like 5 [Source:UniProtKB/Swiss-Prot;Acc:Q8VWF5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.