CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX83512	Canola	nucleus	94.33	95.04
Bra000279.1-P	Field mustard	nucleus	93.69	94.41
CDY42813	Canola	nucleus	92.56	89.84
CDX79841	Canola	nucleus	78.69	80.52
AT2G42890.1	Thale cress	nucleus	84.49	79.48
CDY60197	Canola	endoplasmic reticulum, plasma membrane	79.7	78.22
CDX78826	Canola	nucleus	37.45	44.66
CDY61671	Canola	nucleus	36.82	43.98
CDX94663	Canola	nucleus	39.09	42.06
CDY48336	Canola	nucleus	40.35	41.4
CDY15631	Canola	nucleus	38.34	41.3
CDX99820	Canola	nucleus	40.61	40.66
CDY30687	Canola	nucleus	32.79	30.41
CDX98985	Canola	nucleus	32.79	29.38
CDX70025	Canola	nucleus	32.53	29.05
CDY00238	Canola	nucleus	33.29	28.88
CDX86947	Canola	nucleus	32.91	28.71
CDY30686	Canola	nucleus	17.28	25.85
CDY01848	Canola	plastid	15.51	24.5
CDY71762	Canola	nucleus	7.31	24.17
CDY56219	Canola	plastid	15.64	23.57
CDX83589	Canola	nucleus	16.65	22.72
CDY72437	Canola	nucleus	7.06	22.31
CDY13612	Canola	nucleus	16.9	22.04
CDY40990	Canola	nucleus	16.77	21.73
CDX99727	Canola	nucleus	16.52	21.72
CDY14020	Canola	plastid	6.68	18.93
CDY40768	Canola	nucleus	6.56	17.22
CDY62093	Canola	nucleus, plastid	5.17	16.4
CDY44647	Canola	nucleus, plastid	4.92	16.32

Protein Annotations

Gene3D:3.30.70.330	MapMan:35.1	GO:A0A078HY58	UniProt:A0A078HY58	EnsemblPlants:CDY42812	ProteinID:CDY42812
ProteinID:CDY42812.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	EnsemblPlantsGene:GSBRNA2T00075491001
InterPro:IPR000504	InterPro:IPR012677	InterPro:MEI2-like_RRM3	InterPro:MEI2_like_RRM1	InterPro:Mei2-like_Rrm_C	InterPro:Nucleotide-bd_a/b_plait_sf
PFAM:PF00076	PFAM:PF04059	PFscan:PS50102	PANTHER:PTHR44127	PANTHER:PTHR44127:SF5	InterPro:RBD_domain_sf
InterPro:RRM_dom	SMART:SM00360	SUPFAM:SSF54928	UniParc:UPI0004EF1C14	SEG:seg	:

Description

BnaC03g23940DBnaC03g23940D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HY58]

Coordinates

chrLK032535:-:115086..119484

Molecular Weight (calculated)

87926.6 Da

IEP (calculated)

5.794

GRAVY (calculated)

-0.567

Length

793 amino acids

Sequence
(BLAST)

001: MELESKESLS ADMPSLLRRS AEAFNGGSEY RSATDLSIFS SSLPTLFHEK LNMTDSDSWL SLDDNSPNLN KLVMGNSEKD SLEDAEPHSL EILLPEDENE
101: LLPGLIDELN FSGLPDELED LDVFCTGGGM ELDAESQRDA ASSFVTRKRS NTSFRVSVEH PNGEHPSRTL FVRNINSSID DSELTALFEP FGEIRSLYTA
201: CKSRGFVMIS YYDIRAAHAA MRALQNTLLR KRTLDIHYSI PKENPSEKDM NQGTLVIFNV DSTVSNDELL KLFGAYGEIR EIRETPNRRF HRFIEYYDVR
301: DAEAALKALN RSEIGGKCIK LELSRPGGSR RVSVPSTSQD MDRHEVSSFL ASQVANSPPG NWPIGSPLKG SPTHAFPRPP GLGIIRPFNR DNMPGLASVL
401: PGQTSSFHGF SPVSNDQGLL NHPNQTILNN ALMHNVSYGQ PHSLPEHIGG GISNSMRFVA PPQSSGFGTS SDNSYRWGSP PQHMNYPGAS SSSSSPTERP
501: FAVRHGFPFA ERQVSLLGKY QHHVGSAPSS THFNTYTGPS EVSSLIPLGF GDMGINKSYI NPHGKANLGV SLQGNHNKQD FSGFGMSSLP FGGSRGHEPF
601: AEQGRIQHID GGQYHIDLDR IATGDDTRTT LIIKNIPNKY TYKMLVAEID EKHKGDYDFL CLPIDFKNKC NMGYAFVNMV SPLHIVPFQQ TFNGKIWEKF
701: NSGKVASLAY AEIQGKSALA SYMQNPSTME DEKQLFPEVS HHNDEGQDSK DQDRRFSSIW NIAAPDSDWS YTMDVIENPR KNIDSKNFVQ ESS

Best Arabidopsis Sequence Match ( AT2G42890.1 )
(BLAST)

001: MVSSIIAVAE GKKMELEPNK SLSADMPSLL SRSSEAFNGG TGYRSSSDLS MFSSSLPTLF HEKLNMTDSD SWLSFDESSP NLNKLVIGNS EKDSLEDVEP
101: DALEILLPED ENELLPGLID ELNFTGLPDE LDDLEECDVF CTGGGMELDV ESQDNHAVDA SGMQISDRGA ANAFVPRKRP NTAGRVSVEH PNGEHPSRTL
201: FVRNINSSVE DSELSALFEP FGEIRSLYTA CKSRGFVMIS YYDIRAAHAA MRALQNTLLR KRTLDIHFSI PKENPSEKDM NQGTLVIFNV DTTVSNDELL
301: QLFGAYGEIR EIRETPNRRF HRFIEYYDVR DAETALKALN RSEIGGKCIK LELSRPGGAR RLSVPSQSQD LERTEVTNFY NQVGSHVANS PPGNWPIGSP
401: VKGSPSHAFT RPHGLGMVRP VNSDNMPGLA SILPAHPSSF HGFSPVSNDQ GLLNHSNQTI LNKGLMHNIS YGQPHSLPEH ITGGISNSMR FIAPHSSGFG
501: TSSDHRYRWG SPPQHMNYPG YTGVSSSSSS TERPFTVRHG FPFAERQASL LGKYQHHVGS APSSIHFNTQ MNCYTGSPEI PLGFSDMGIN RNYNSAHGKA
601: NLGVSLPGNS SEQDFTGFGM SSMPTVPFGG SRGLQSVRPE PFAEQGRIHN HESHNQNQFI DGGRYHIDLD RIASGDEIRT TLIIKNIPNK YTYKMLVAEI
701: DEKHKGDYDF LCLPTDFKNK CNMGHAFINM VSPLHIVPFQ QTFNGKIWEK FNSGKVASLA YAEIQGKSAL ASYMQTPSSM KEQKQLFPEV SYHDDGQDAN
801: DHEQLFSSIW NITAPDSDWS YTMDLIENPR ENGNSKNAAE ESS

Arabidopsis Description

ML2ML2 [Source:UniProtKB/TrEMBL;Acc:A0A178VQK0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.