CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY00652
CDY27967
CDY64943
CDY67456

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G61960.1	CDY00652	AT3G08850.1	15720729
AT5G61960.1	CDY27967	AT3G08850.1	15720729
AT5G61960.1	CDY64943	AT3G08850.1	15720729
AT5G61960.1	CDY67456	AT3G08850.1	15720729

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY30686	Canola	nucleus	59.88	96.6
CDY71762	Canola	nucleus	23.86	85.0
CDY00238	Canola	nucleus	87.95	82.28
CDX86947	Canola	nucleus	87.37	82.18
AT5G61960.1	Thale cress	nucleus	87.72	81.97
CDY72437	Canola	nucleus	23.16	78.88
CDX98985	Canola	nucleus	70.53	68.14
CDX70025	Canola	nucleus	70.53	67.91
VIT_00s0239g00110.t01	Wine grape	plastid	7.84	60.91
KRH59735	Soybean	nucleus	47.49	42.83
KRH41056	Soybean	nucleus	47.72	42.77
KRH63864	Soybean	nucleus	47.49	41.81
KRH54096	Soybean	nucleus	46.55	41.16
CDX78826	Canola	nucleus	30.18	38.8
CDX94663	Canola	nucleus	32.98	38.26
CDY61671	Canola	nucleus	29.71	38.25
CDY48336	Canola	nucleus	34.39	38.03
CDY15631	Canola	nucleus	32.63	37.91
CDX99820	Canola	nucleus	34.74	37.5
HORVU1Hr1G000530.2	Barley	nucleus	25.85	37.27
Os05t0102800-01	Rice	nucleus	38.83	34.76
Zm00001d035763_P003	Maize	plastid	37.66	33.97
TraesCS1B01G008000.1	Wheat	nucleus	36.37	33.23
TraesCS1D01G002500.1	Wheat	nucleus	36.26	33.01
CDX83512	Canola	nucleus	30.29	32.91
CDY42812	Canola	nucleus	30.41	32.79
OQU77194	Sorghum	plastid	30.29	31.66
CDX79841	Canola	nucleus	28.42	31.35
TraesCS1A01G005800.2	Wheat	nucleus	35.44	31.27
CDY42813	Canola	nucleus	29.71	31.09
CDY60197	Canola	endoplasmic reticulum, plasma membrane	29.01	30.69
CDY01848	Canola	plastid	13.8	23.51
CDY14020	Canola	plastid	7.25	22.14
CDY56219	Canola	plastid	13.45	21.86
CDX83589	Canola	nucleus	14.5	21.34
CDY13612	Canola	nucleus	14.74	20.72
CDY62093	Canola	nucleus, plastid	5.96	20.4
CDY40990	Canola	nucleus	14.5	20.26
CDY40768	Canola	nucleus	7.13	20.2
CDY44647	Canola	nucleus, plastid	5.61	20.08
CDX99727	Canola	nucleus	14.04	19.9

Protein Annotations

Gene3D:3.30.70.330	MapMan:35.1	GO:A0A078GZM6	UniProt:A0A078GZM6	EnsemblPlants:CDY30687	ProteinID:CDY30687
ProteinID:CDY30687.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	EnsemblPlantsGene:GSBRNA2T00046018001
InterPro:IPR000504	InterPro:IPR012677	InterPro:MEI2-like_RRM3	InterPro:MEI2_like_RRM1	InterPro:Mei2-like_Rrm_C	InterPro:Nucleotide-bd_a/b_plait_sf
PFAM:PF00076	PFAM:PF04059	PFscan:PS50102	PANTHER:PTHR44127	PANTHER:PTHR44127:SF6	InterPro:RBD_domain_sf
InterPro:RRM_dom	SMART:SM00360	SUPFAM:SSF54928	UniParc:UPI0004EE0FE5	SEG:seg	:

Description

BnaA02g33090DBnaA02g33090D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GZM6]

Coordinates

chrLK032258:-:15603..19785

Molecular Weight (calculated)

94014.9 Da

IEP (calculated)

6.895

GRAVY (calculated)

-0.600

Length

855 amino acids

Sequence
(BLAST)

001: MSENQGGRLP KSSWTPESYQ LKPQSSLSGV HSSLSPNARN TTSDSQWESS LFSSSLSDIF TRKLRLQGSD MLSPMSGNTA VTHREEEPSE TLEEIEAQTI
101: GNLLPDEDDL FAEVMGEVGP KSRANGDDLD DFDLFSSVGG MELDGDVFSS VGHRNGERGS NNSVGEHRRG EIPSRTILAG NIGSNVEDYE LKVLFEQFGD
201: IQAFLTAFKS RGFIMVSFYD IRAAQNAARA LHNKLLRGTK LDIRYSIPTE NPSEKDASKG ALLINNLDSS ISNEELNRMV KSYGEIKEIR RTVHDNPQIY
301: IEFFDIRAAD AALGGLNGLE VAGKQLKLAP ACPEATRYMQ DAEGCLPKMS FTNTSSVNMG RHFPGLISST SIDGGSMRVS HSSVGSPVNS FIERHRSLSI
401: PIGFQPPANV VSASKPVGVQ EHGHSFDNTN MGIQSMPNLH PHSFSEYLDN FANGSPYKSS AANEGFMLHN VRGVDGFNGG GVGSPMNQSS RRPNPNLWSN
501: SNTQQLNPSS GMMWPNSPSH INSIPTQRPP VTVFSRAPPI MVNMASSPVH HHIGSAPVLN SPFWDRRQAY VAESLESPGF HIGSHGSMGF PGSSPSRPME
601: IGSHKSFSHV VGNRMDVNSP NAVLRSPQQL SHLFPGRSPM GSMPGSYDSP NERYRNLSHR RSESSSSNAD KKLYELDVDR ILRGDDSRTT LMVKNIPNKY
701: TSKMLLSAID EHCKGTYDFL YLPIDFKNKC NVGYAFINLT EPEKIVPFYK AFNGKKWEKF NSEKVATLTY ARIQGKVALI AHFQNSSLMN EDKRCRPILF
801: HTDGPNAGDQ EPFPMGTNIR SRPGKPRSSS TDNYNSFSIA SASENREEHP NGTEN

Best Arabidopsis Sequence Match ( AT5G61960.5 )
(BLAST)

001: MRGVSTPSHF HEDIHITSER QFGFMKTDMM PENQGGRDRL SSMPKSSWTS ESYQLKPQSS FSGSHPSGSP NARNTTNGSQ WESSLFSSSM SDLFSRKLRL
101: QGSDMLSTMS ANTVVTHREE EPSESLEEIE AQTIGNLLPD EDDLFAEVTG EVGRKSRANT GDELDEFDLF SSVGGMELDG DIFSSVSHRN GERGGNNSVG
201: ELNRGEIPSR TLLVGNISSN VEDYELKVLF EQFGDIQALH TACKNRGFIM VSYCDIRAAQ NAARALQNKL LRGTKLDIRY SISKENPSQK DTSKGALLVN
301: NLDSSISNQE LNRLVKSYGE VKEIRRTMHD NSQIYIEFFD VRAAAAALGG LNGLEVAGKK LQLVPTYPEG TRYTSQCAAN DTEGCLPKTS YSNTSSGHIG
401: RHFPGMISST SSDGGSMRVI HNSIGSPVNS FIERHRSLSI PIGFPPSANG ISASKPVGLQ EHGHHFDNSN MGIQSMPNLH PHSFSEYVDN FANGSPYTSS
501: AFSEMVSDGS KANEGFMIHN VRGVEGFSGG GIGSPMHQSS RRPINLWSNS NTQQQNPSSG MMWPNSPSHI NSIPTQRPPV TVFSRAPPIM VNMASSPVHH
601: HIGSAPVLNS PFWDRRQAYV AESLESSGFH IGSHGSMGIP GSSPSHPMDI GSHKTFSVGG NRMDVNSQNA VLRSPQQLSH LFPGRSPMGS MPGSFDSPNE
701: RYRNLSHRRS ESSSSNADKK LYELDVDRIL RGEDRRTTLM IKNIPNKYTS KMLLSAIDEH CKGTYDFLYL PIDFKNKCNV GYAFINLIEP EKIVPFFKAF
801: NGKKWEKFNS EKVATLTYAR IQGKTALIAH FQNSSLMNED KRCRPILFHT DGPNAGDQEP FPMGSNIRSR PGKPRSSSID NYNSFSISSV SENREETPNG
901: TDPFLKEN

Arabidopsis Description

ML1Protein MEI2-like 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8W4I9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.