Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- plastid 1
- cytosol 1
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra004728.1-P | Field mustard | nucleus | 90.84 | 95.52 |
| CDY60197 | Canola | endoplasmic reticulum, plasma membrane | 92.26 | 88.49 |
| CDX83512 | Canola | nucleus | 80.26 | 79.03 |
| CDY42812 | Canola | nucleus | 80.52 | 78.69 |
| AT2G42890.1 | Thale cress | nucleus | 83.23 | 76.51 |
| CDY42813 | Canola | nucleus | 77.81 | 73.81 |
| CDX78826 | Canola | nucleus | 37.16 | 43.31 |
| CDY61671 | Canola | nucleus | 36.77 | 42.92 |
| CDX94663 | Canola | nucleus | 38.97 | 40.98 |
| CDY15631 | Canola | nucleus | 38.32 | 40.35 |
| CDY48336 | Canola | nucleus | 40.0 | 40.1 |
| CDX99820 | Canola | nucleus | 40.26 | 39.39 |
| CDY30687 | Canola | nucleus | 31.35 | 28.42 |
| CDX98985 | Canola | nucleus | 31.74 | 27.8 |
| CDX70025 | Canola | nucleus | 31.35 | 27.36 |
| CDY00238 | Canola | nucleus | 32.13 | 27.24 |
| CDX86947 | Canola | nucleus | 31.74 | 27.06 |
| CDY71762 | Canola | nucleus | 8.13 | 26.25 |
| CDY01848 | Canola | plastid | 16.52 | 25.5 |
| CDY56219 | Canola | plastid | 16.26 | 23.95 |
| CDY72437 | Canola | nucleus | 7.61 | 23.51 |
| CDY30686 | Canola | nucleus | 15.87 | 23.21 |
| CDX83589 | Canola | nucleus | 16.9 | 22.55 |
| CDY13612 | Canola | nucleus | 17.42 | 22.2 |
| CDY40990 | Canola | nucleus | 17.03 | 21.57 |
| CDX99727 | Canola | nucleus | 16.65 | 21.39 |
| CDY14020 | Canola | plastid | 6.71 | 18.57 |
| CDY40768 | Canola | nucleus | 6.71 | 17.22 |
| CDY62093 | Canola | nucleus, plastid | 5.16 | 16.0 |
| CDY44647 | Canola | nucleus, plastid | 4.9 | 15.9 |
Protein Annotations
| Gene3D:3.30.70.330 | MapMan:35.1 | GO:A0A078CRR4 | EnsemblPlants:CDX79841 | ProteinID:CDX79841 | ProteinID:CDX79841.1 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 | EnsemblPlantsGene:GSBRNA2T00132685001 | InterPro:IPR000504 | InterPro:IPR012677 |
| InterPro:MEI2-like_RRM3 | InterPro:MEI2_like_RRM1 | InterPro:Mei2-like_Rrm_C | InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 | PFAM:PF04059 |
| PFscan:PS50102 | PANTHER:PTHR44127 | PANTHER:PTHR44127:SF5 | InterPro:RBD_domain_sf | InterPro:RRM_dom | SMART:SM00360 |
| SUPFAM:SSF54928 | SignalP:SignalP-noTM | UniParc:UPI0004EDD51E | SEG:seg | : | : |
Description
BnaA05g03150D
Coordinates
chrLK031819:-:438387..443524
Molecular Weight (calculated)
85789.3 Da
IEP (calculated)
5.745
GRAVY (calculated)
-0.544
Length
775 amino acids
Sequence
(BLAST)
(BLAST)
001: MFYFVLIIHI SLKLGGDAKK MELEPKESLS AADMPSLESK SSETFNGGSA SDLSMFSSSL PTLLHEKLNM TDSDSWLSLD DKLGIGNSEN DSLEDVEPDS
101: LETLLPEDEN ELLPGLIDEL NFNGLPDELE DCDVFCTGGG MELDVESQDN HAANAFASRK RPNTSGRVSV EHPNGEHPSR TLFVRNINSS VEDSELTALF
201: EPFGEIRSLY TACKSRGFVM ISYYDIRASH AAMRALQNTL LRKRTLDIHF SIPKENPSEK DMNQGTLVIF NVDTTVSNDE LLKLFGAHGE IREIRETPNR
301: SFHRFIEYYD VRDAESALKA LDRSEIGGKC IKLELSRPGG ARRVSVPSTS QDLDRNEVAN FFNQVANSPP VGNWQVGSPV KGSPSHAFPR PHGLGNMPGL
401: ASILPVHQPS RYQGLLNHPN QTILNKGLMH NVAYGQPHSL PEHIGGGISN SMRFIAPPHS SGFGTSSDNR YRWGSPPQHM NYPGYTGGAS SSSSKHGFPF
501: SERQGSLLGK YQHHVGSAPS SSHFNNHMIP FGFGDMGVNK SYPNAHGQAN VGVNFTGSGM SLLPTVPFGG SRGLQSVRHE PFAEERRITH FETQLTDDGR
601: YHIDLDRIAT GDDTRTTLII KNIPNKYTYM MLVAEIDEKH KGDYDFLCLP IEFRNKCNMG YAFVNMVSPL HIVPFQQTFN GKVWENFNSG KVASLAYAEI
701: QGKSALASYM QNPSPMKDEK HLFPEVSHHN GDGQDSNDQE RLLSSIWNLT APDPDWSYTA DKNVNSKNIV EDEST
101: LETLLPEDEN ELLPGLIDEL NFNGLPDELE DCDVFCTGGG MELDVESQDN HAANAFASRK RPNTSGRVSV EHPNGEHPSR TLFVRNINSS VEDSELTALF
201: EPFGEIRSLY TACKSRGFVM ISYYDIRASH AAMRALQNTL LRKRTLDIHF SIPKENPSEK DMNQGTLVIF NVDTTVSNDE LLKLFGAHGE IREIRETPNR
301: SFHRFIEYYD VRDAESALKA LDRSEIGGKC IKLELSRPGG ARRVSVPSTS QDLDRNEVAN FFNQVANSPP VGNWQVGSPV KGSPSHAFPR PHGLGNMPGL
401: ASILPVHQPS RYQGLLNHPN QTILNKGLMH NVAYGQPHSL PEHIGGGISN SMRFIAPPHS SGFGTSSDNR YRWGSPPQHM NYPGYTGGAS SSSSKHGFPF
501: SERQGSLLGK YQHHVGSAPS SSHFNNHMIP FGFGDMGVNK SYPNAHGQAN VGVNFTGSGM SLLPTVPFGG SRGLQSVRHE PFAEERRITH FETQLTDDGR
601: YHIDLDRIAT GDDTRTTLII KNIPNKYTYM MLVAEIDEKH KGDYDFLCLP IEFRNKCNMG YAFVNMVSPL HIVPFQQTFN GKVWENFNSG KVASLAYAEI
701: QGKSALASYM QNPSPMKDEK HLFPEVSHHN GDGQDSNDQE RLLSSIWNLT APDPDWSYTA DKNVNSKNIV EDEST
001: MVSSIIAVAE GKKMELEPNK SLSADMPSLL SRSSEAFNGG TGYRSSSDLS MFSSSLPTLF HEKLNMTDSD SWLSFDESSP NLNKLVIGNS EKDSLEDVEP
101: DALEILLPED ENELLPGLID ELNFTGLPDE LDDLEECDVF CTGGGMELDV ESQDNHAVDA SGMQISDRGA ANAFVPRKRP NTAGRVSVEH PNGEHPSRTL
201: FVRNINSSVE DSELSALFEP FGEIRSLYTA CKSRGFVMIS YYDIRAAHAA MRALQNTLLR KRTLDIHFSI PKENPSEKDM NQGTLVIFNV DTTVSNDELL
301: QLFGAYGEIR EIRETPNRRF HRFIEYYDVR DAETALKALN RSEIGGKCIK LELSRPGGAR RLSVPSQSQD LERTEVTNFY NQVGSHVANS PPGNWPIGSP
401: VKGSPSHAFT RPHGLGMVRP VNSDNMPGLA SILPAHPSSF HGFSPVSNDQ GLLNHSNQTI LNKGLMHNIS YGQPHSLPEH ITGGISNSMR FIAPHSSGFG
501: TSSDHRYRWG SPPQHMNYPG YTGVSSSSSS TERPFTVRHG FPFAERQASL LGKYQHHVGS APSSIHFNTQ MNCYTGSPEI PLGFSDMGIN RNYNSAHGKA
601: NLGVSLPGNS SEQDFTGFGM SSMPTVPFGG SRGLQSVRPE PFAEQGRIHN HESHNQNQFI DGGRYHIDLD RIASGDEIRT TLIIKNIPNK YTYKMLVAEI
701: DEKHKGDYDF LCLPTDFKNK CNMGHAFINM VSPLHIVPFQ QTFNGKIWEK FNSGKVASLA YAEIQGKSAL ASYMQTPSSM KEQKQLFPEV SYHDDGQDAN
801: DHEQLFSSIW NITAPDSDWS YTMDLIENPR ENGNSKNAAE ESS
101: DALEILLPED ENELLPGLID ELNFTGLPDE LDDLEECDVF CTGGGMELDV ESQDNHAVDA SGMQISDRGA ANAFVPRKRP NTAGRVSVEH PNGEHPSRTL
201: FVRNINSSVE DSELSALFEP FGEIRSLYTA CKSRGFVMIS YYDIRAAHAA MRALQNTLLR KRTLDIHFSI PKENPSEKDM NQGTLVIFNV DTTVSNDELL
301: QLFGAYGEIR EIRETPNRRF HRFIEYYDVR DAETALKALN RSEIGGKCIK LELSRPGGAR RLSVPSQSQD LERTEVTNFY NQVGSHVANS PPGNWPIGSP
401: VKGSPSHAFT RPHGLGMVRP VNSDNMPGLA SILPAHPSSF HGFSPVSNDQ GLLNHSNQTI LNKGLMHNIS YGQPHSLPEH ITGGISNSMR FIAPHSSGFG
501: TSSDHRYRWG SPPQHMNYPG YTGVSSSSSS TERPFTVRHG FPFAERQASL LGKYQHHVGS APSSIHFNTQ MNCYTGSPEI PLGFSDMGIN RNYNSAHGKA
601: NLGVSLPGNS SEQDFTGFGM SSMPTVPFGG SRGLQSVRPE PFAEQGRIHN HESHNQNQFI DGGRYHIDLD RIASGDEIRT TLIIKNIPNK YTYKMLVAEI
701: DEKHKGDYDF LCLPTDFKNK CNMGHAFINM VSPLHIVPFQ QTFNGKIWEK FNSGKVASLA YAEIQGKSAL ASYMQTPSSM KEQKQLFPEV SYHDDGQDAN
801: DHEQLFSSIW NITAPDSDWS YTMDLIENPR ENGNSKNAAE ESS
Arabidopsis Description
ML2ML2 [Source:UniProtKB/TrEMBL;Acc:A0A178VQK0]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.