Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
- plastid 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra013285.1-P | Field mustard | nucleus | 95.33 | 95.33 |
| CDX78826 | Canola | nucleus | 95.03 | 94.89 |
| CDX94663 | Canola | nucleus | 59.19 | 53.32 |
| CDY15631 | Canola | nucleus | 58.43 | 52.72 |
| CDY48336 | Canola | nucleus | 60.99 | 52.39 |
| CDX99820 | Canola | nucleus | 61.45 | 51.52 |
| CDX83512 | Canola | nucleus | 44.13 | 37.23 |
| CDY42812 | Canola | nucleus | 43.98 | 36.82 |
| CDX79841 | Canola | nucleus | 42.92 | 36.77 |
| CDY42813 | Canola | nucleus | 43.98 | 35.74 |
| CDY60197 | Canola | endoplasmic reticulum, plasma membrane | 43.37 | 35.64 |
| CDY30687 | Canola | nucleus | 38.25 | 29.71 |
| CDX98985 | Canola | nucleus | 38.25 | 28.7 |
| CDX70025 | Canola | nucleus | 37.5 | 28.04 |
| CDY01848 | Canola | plastid | 20.33 | 26.89 |
| CDX86947 | Canola | nucleus | 36.75 | 26.84 |
| CDY00238 | Canola | nucleus | 36.75 | 26.7 |
| CDY30686 | Canola | nucleus | 20.63 | 25.85 |
| CDY56219 | Canola | plastid | 19.73 | 24.9 |
| CDX83589 | Canola | nucleus | 21.39 | 24.44 |
| CDY13612 | Canola | nucleus | 21.69 | 23.68 |
| CDX99727 | Canola | nucleus | 21.08 | 23.22 |
| CDY40990 | Canola | nucleus | 21.39 | 23.2 |
| CDY14020 | Canola | plastid | 9.34 | 22.14 |
| CDY71762 | Canola | nucleus | 7.83 | 21.67 |
| CDY72437 | Canola | nucleus | 7.53 | 19.92 |
| CDY40768 | Canola | nucleus | 9.04 | 19.87 |
| CDY44647 | Canola | nucleus, plastid | 6.93 | 19.25 |
| CDY62093 | Canola | nucleus, plastid | 7.08 | 18.8 |
Protein Annotations
| Gene3D:3.30.70.330 | MapMan:35.1 | GO:A0A078JB98 | UniProt:A0A078JB98 | EnsemblPlants:CDY61671 | ProteinID:CDY61671 |
| ProteinID:CDY61671.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 | EnsemblPlantsGene:GSBRNA2T00034169001 |
| InterPro:IPR000504 | InterPro:IPR012677 | InterPro:MEI2-like_RRM3 | InterPro:MEI2_like_RRM1 | InterPro:Mei2-like_Rrm_C | InterPro:Nucleotide-bd_a/b_plait_sf |
| PFAM:PF00076 | PFAM:PF04059 | PFscan:PS50102 | PANTHER:PTHR44127 | PANTHER:PTHR44127:SF5 | InterPro:RBD_domain_sf |
| InterPro:RRM_dom | SMART:SM00360 | SUPFAM:SSF54928 | UniParc:UPI0004EF2939 | SEG:seg | : |
Description
BnaC01g40820DBnaC01g40820D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JB98]
Coordinates
chrLK034024:-:29984..33288
Molecular Weight (calculated)
73750.1 Da
IEP (calculated)
6.828
GRAVY (calculated)
-0.549
Length
664 amino acids
Sequence
(BLAST)
(BLAST)
001: MNIPNGKFSN ASSDNTSFFS SSLPLLPQQN LNPLDQIASG LNHFNDDHDS HPMDEEQLLA GLMDEINLTS LPNTLDDSEE YDLFGSGGGL ELESDLPRMS
101: FADSKTANGY FQNGMGSVAG EHPYGEHPSR TLFVRNINST VDDSELRAIF EQYGDIRTLY TACKHRGFVM VSYYDIRASR AAMRALQTKM LKGRKLDIHF
201: SIPKDNPSEK DVNQGTLVVF NLAPSVSNKD LENIFGSYGE IKEIRETPNK RHHKFVEFFD VRSADSALKA LNRTDIAGKR IKLEHSRPGG ARRNMMLQTN
301: PEYEQDDSRS YLNLSDSPLA SSPAGNYWGN SPVDHSPLQS LSRSPLSPTL SSILNSQRVS HLDHLFPTSH KASAYQQTQS CGTASSYGSL NSLSGSEFPS
401: SSLWHMNQFP SNGKAHMFPY SALNGSNHVG SAPSGFFRRS SETSSMGSAA FRGASGNAAP RNMREAGSPS FRMVSSLRHS QLFTGSVSSY QWPVATTASI
501: DGCNMNQVDS KTQFQLDLSK IMSGEDLRTT LMIKNIPNKY TRKMLLAAID ETNRGTYDFL YLPIDFKNKC NVGYAFINMV SPTFIIALYE AFDGKKWDKF
601: NSEKVASLAY ARIQGKTALM AHFQNSSLMN EDRRCHPIVF DGPESSYPFI VDMEHSQDQS THRS
101: FADSKTANGY FQNGMGSVAG EHPYGEHPSR TLFVRNINST VDDSELRAIF EQYGDIRTLY TACKHRGFVM VSYYDIRASR AAMRALQTKM LKGRKLDIHF
201: SIPKDNPSEK DVNQGTLVVF NLAPSVSNKD LENIFGSYGE IKEIRETPNK RHHKFVEFFD VRSADSALKA LNRTDIAGKR IKLEHSRPGG ARRNMMLQTN
301: PEYEQDDSRS YLNLSDSPLA SSPAGNYWGN SPVDHSPLQS LSRSPLSPTL SSILNSQRVS HLDHLFPTSH KASAYQQTQS CGTASSYGSL NSLSGSEFPS
401: SSLWHMNQFP SNGKAHMFPY SALNGSNHVG SAPSGFFRRS SETSSMGSAA FRGASGNAAP RNMREAGSPS FRMVSSLRHS QLFTGSVSSY QWPVATTASI
501: DGCNMNQVDS KTQFQLDLSK IMSGEDLRTT LMIKNIPNKY TRKMLLAAID ETNRGTYDFL YLPIDFKNKC NVGYAFINMV SPTFIIALYE AFDGKKWDKF
601: NSEKVASLAY ARIQGKTALM AHFQNSSLMN EDRRCHPIVF DGPESSYPFI VDMEHSQDQS THRS
001: MDIPHEAEAG AWGILPGFGR HHHPSSDATL FSSSLPVFPR GKLQLSDNRD GFSLIDDTAV SRTNKFNESA DDFESHSIGN LLPDEEDLLT GMMDDLDLGE
101: LPDADDYDLF GSGGGMELDA DFRDNLSMSG PPRLSLSSLG GNAIPQFNIP NGAGTVAGEH PYGEHPSRTL FVRNINSNVE DSELTALFEQ YGDIRTLYTT
201: CKHRGFVMIS YYDIRSARMA MRSLQNKPLR RRKLDIHFSI PKDNPSEKDM NQGTLVVFNL DPSISNDDLH GIFGAHGEIK EIRETPHKRH HKFVEFYDVR
301: GAEAALKALN RCEIAGKRIK VEPSRPGGAR RSLMLQLNQD LENDDLHYLP MIGSPMANSP PMQGNWPLNS PVEGSPLQSV LSRSPVFGLS PTRNGHLSGL
401: ASALNSQGPS SKLAPIGRGQ IGSNGFQQSS HLFQEPKMDN KYTGNLSPSG PLISNGGGIE TLSGSEFLWG SPNARSEPSS SSVWSTSSTG NPLFSTRVDR
501: SVPFPHQHQN QSRSHHHFHV GSAPSGVPLE KHFGFVPESS KDALFMNTVG LQGMSGMGLN GGSFSSKMAN NGIINSGSMA ENGFSSYRMM SSPRFSPMFL
601: SSGLNPGRFA SGFDSLYENG RPRRVENNSN QVESRKQFQL DLEKILNGED SRTTLMIKNI PNKYTSKMLL AAIDEKNQGT YNFLYLPIDF KNKCNVGYAF
701: INMLNPELII PFYEAFNGKK WEKFNSEKVA SLAYARIQGK SALIAHFQNS SLMNEDMRCR PIIFDTPNNP ESVEQVVDEE SKNMDLLDSQ LSDDDGRERS
101: LPDADDYDLF GSGGGMELDA DFRDNLSMSG PPRLSLSSLG GNAIPQFNIP NGAGTVAGEH PYGEHPSRTL FVRNINSNVE DSELTALFEQ YGDIRTLYTT
201: CKHRGFVMIS YYDIRSARMA MRSLQNKPLR RRKLDIHFSI PKDNPSEKDM NQGTLVVFNL DPSISNDDLH GIFGAHGEIK EIRETPHKRH HKFVEFYDVR
301: GAEAALKALN RCEIAGKRIK VEPSRPGGAR RSLMLQLNQD LENDDLHYLP MIGSPMANSP PMQGNWPLNS PVEGSPLQSV LSRSPVFGLS PTRNGHLSGL
401: ASALNSQGPS SKLAPIGRGQ IGSNGFQQSS HLFQEPKMDN KYTGNLSPSG PLISNGGGIE TLSGSEFLWG SPNARSEPSS SSVWSTSSTG NPLFSTRVDR
501: SVPFPHQHQN QSRSHHHFHV GSAPSGVPLE KHFGFVPESS KDALFMNTVG LQGMSGMGLN GGSFSSKMAN NGIINSGSMA ENGFSSYRMM SSPRFSPMFL
601: SSGLNPGRFA SGFDSLYENG RPRRVENNSN QVESRKQFQL DLEKILNGED SRTTLMIKNI PNKYTSKMLL AAIDEKNQGT YNFLYLPIDF KNKCNVGYAF
701: INMLNPELII PFYEAFNGKK WEKFNSEKVA SLAYARIQGK SALIAHFQNS SLMNEDMRCR PIIFDTPNNP ESVEQVVDEE SKNMDLLDSQ LSDDDGRERS
Arabidopsis Description
ML5Protein MEI2-like 5 [Source:UniProtKB/Swiss-Prot;Acc:Q8VWF5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.