Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX83512 | Canola | nucleus | 90.21 | 93.65 |
| Bra000279.1-P | Field mustard | nucleus | 89.6 | 93.01 |
| CDY42812 | Canola | nucleus | 89.84 | 92.56 |
| CDX79841 | Canola | nucleus | 73.81 | 77.81 |
| AT2G42890.1 | Thale cress | nucleus | 78.95 | 76.51 |
| CDY60197 | Canola | endoplasmic reticulum, plasma membrane | 74.66 | 75.5 |
| CDX78826 | Canola | nucleus | 36.35 | 44.66 |
| CDY61671 | Canola | nucleus | 35.74 | 43.98 |
| CDX94663 | Canola | nucleus | 38.19 | 42.33 |
| CDY48336 | Canola | nucleus | 39.78 | 42.04 |
| CDY15631 | Canola | nucleus | 37.45 | 41.58 |
| CDX99820 | Canola | nucleus | 40.02 | 41.29 |
| CDY30687 | Canola | nucleus | 31.09 | 29.71 |
| CDX98985 | Canola | nucleus | 31.7 | 29.27 |
| CDX70025 | Canola | nucleus | 31.33 | 28.83 |
| CDY00238 | Canola | nucleus | 31.58 | 28.23 |
| CDX86947 | Canola | nucleus | 31.21 | 28.05 |
| CDY30686 | Canola | nucleus | 16.03 | 24.72 |
| CDY01848 | Canola | plastid | 15.06 | 24.5 |
| CDY71762 | Canola | nucleus | 7.1 | 24.17 |
| CDY56219 | Canola | plastid | 15.18 | 23.57 |
| CDX83589 | Canola | nucleus | 16.16 | 22.72 |
| CDY72437 | Canola | nucleus | 6.85 | 22.31 |
| CDY13612 | Canola | nucleus | 16.52 | 22.2 |
| CDY40990 | Canola | nucleus | 16.4 | 21.9 |
| CDX99727 | Canola | nucleus | 16.16 | 21.89 |
| CDY14020 | Canola | plastid | 6.49 | 18.93 |
| CDY40768 | Canola | nucleus | 6.36 | 17.22 |
| CDY62093 | Canola | nucleus, plastid | 5.14 | 16.8 |
| CDY44647 | Canola | nucleus, plastid | 4.9 | 16.74 |
Protein Annotations
| Gene3D:3.30.70.330 | MapMan:35.1 | GO:A0A078I138 | UniProt:A0A078I138 | EnsemblPlants:CDY42813 | ProteinID:CDY42813 |
| ProteinID:CDY42813.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 | EnsemblPlantsGene:GSBRNA2T00075493001 |
| InterPro:IPR000504 | InterPro:IPR012677 | InterPro:MEI2-like_RRM3 | InterPro:MEI2_like_RRM1 | InterPro:Mei2-like_Rrm_C | InterPro:Neprosin_propep |
| InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 | PFAM:PF04059 | PFAM:PF14365 | PFscan:PS50102 | PANTHER:PTHR44127 |
| PANTHER:PTHR44127:SF5 | InterPro:RBD_domain_sf | InterPro:RRM_dom | SMART:SM00360 | SUPFAM:SSF54928 | UniParc:UPI0004EE6A53 |
| SEG:seg | : | : | : | : | : |
Description
BnaC03g23930DBnaC03g23930D protein [Source:UniProtKB/TrEMBL;Acc:A0A078I138]
Coordinates
chrLK032535:-:126717..132913
Molecular Weight (calculated)
90667.3 Da
IEP (calculated)
6.250
GRAVY (calculated)
-0.559
Length
817 amino acids
Sequence
(BLAST)
(BLAST)
001: MELESKESLS ADMPSLLRRS AEAFNGGSEY RSATDLSIFS SSLPTLFHEK LNMTDSDSWL SLDDNSPNLN KLVMGNSEKD SLEDAEPHSL EILLPEDENE
101: LLPGLIDELN FSGLPDELED LDVFCTGGGM ELDAESQRDA ASSFVTRKRS NTSFRVSVEH PNGEHPSRTL FVRNINSSID DSELTALFEP FGEIRSLYTA
201: CKSRGFVMIS YYDIRAAHAA MRALQNTLLR KRTLDIHYSI PKENPSEKDM NQGTLVIFNV DSTVSNDELL KLFGAYGEIR EIRETPNRRF HRFIEYYDVR
301: DAEAALKALN RSEIGGKCIK LELSRPGGSR RVSVPSTSQD MDRHEVSSFL ASQVANSPPG NWPIGSPLKG SPTHAFPRPP GLGIIRPFNR DNMPGLASVL
401: PGQTSSFHGF SPVSNDQGLL IHPNQTSLSK GLMHSYPYGQ PHSLPEHIGG GISNSMSFIA PHSPGFGTSS DNRYRWGSPP QHMNYPGASS SSSSPTERPF
501: TVRHGFPFAE RQVSLLGKYQ HHVGSAPSST HFNAHMNCYP GSPETSSLIP LGFGDLGINK SYINPHGKAN FGVSLQGNHN KLDFSGFGMS SLPFGESRGH
601: EPFAEQGRIQ HIDGGQYHID LDIIATGDDI RTTLIIKNIP NKYTYKMLVA EIDEKHKGDY DFLCLPIDFK NKCNMGYAFV NMVSPLHIVP FQQTFNGKIW
701: EKFNSGKVAS LAYAEIQGKS ALASYMQNPS TMEDEKQLFP EVSHHNDEGQ DSKDQSSDGE DVNCVDKKKQ PAFENILLKN HVLQAWPSEI PKPIGTFQKD
801: KRQKTNIRSP CQHCYVP
101: LLPGLIDELN FSGLPDELED LDVFCTGGGM ELDAESQRDA ASSFVTRKRS NTSFRVSVEH PNGEHPSRTL FVRNINSSID DSELTALFEP FGEIRSLYTA
201: CKSRGFVMIS YYDIRAAHAA MRALQNTLLR KRTLDIHYSI PKENPSEKDM NQGTLVIFNV DSTVSNDELL KLFGAYGEIR EIRETPNRRF HRFIEYYDVR
301: DAEAALKALN RSEIGGKCIK LELSRPGGSR RVSVPSTSQD MDRHEVSSFL ASQVANSPPG NWPIGSPLKG SPTHAFPRPP GLGIIRPFNR DNMPGLASVL
401: PGQTSSFHGF SPVSNDQGLL IHPNQTSLSK GLMHSYPYGQ PHSLPEHIGG GISNSMSFIA PHSPGFGTSS DNRYRWGSPP QHMNYPGASS SSSSPTERPF
501: TVRHGFPFAE RQVSLLGKYQ HHVGSAPSST HFNAHMNCYP GSPETSSLIP LGFGDLGINK SYINPHGKAN FGVSLQGNHN KLDFSGFGMS SLPFGESRGH
601: EPFAEQGRIQ HIDGGQYHID LDIIATGDDI RTTLIIKNIP NKYTYKMLVA EIDEKHKGDY DFLCLPIDFK NKCNMGYAFV NMVSPLHIVP FQQTFNGKIW
701: EKFNSGKVAS LAYAEIQGKS ALASYMQNPS TMEDEKQLFP EVSHHNDEGQ DSKDQSSDGE DVNCVDKKKQ PAFENILLKN HVLQAWPSEI PKPIGTFQKD
801: KRQKTNIRSP CQHCYVP
001: MVSSIIAVAE GKKMELEPNK SLSADMPSLL SRSSEAFNGG TGYRSSSDLS MFSSSLPTLF HEKLNMTDSD SWLSFDESSP NLNKLVIGNS EKDSLEDVEP
101: DALEILLPED ENELLPGLID ELNFTGLPDE LDDLEECDVF CTGGGMELDV ESQDNHAVDA SGMQISDRGA ANAFVPRKRP NTAGRVSVEH PNGEHPSRTL
201: FVRNINSSVE DSELSALFEP FGEIRSLYTA CKSRGFVMIS YYDIRAAHAA MRALQNTLLR KRTLDIHFSI PKENPSEKDM NQGTLVIFNV DTTVSNDELL
301: QLFGAYGEIR EIRETPNRRF HRFIEYYDVR DAETALKALN RSEIGGKCIK LELSRPGGAR RLSVPSQSQD LERTEVTNFY NQVGSHVANS PPGNWPIGSP
401: VKGSPSHAFT RPHGLGMVRP VNSDNMPGLA SILPAHPSSF HGFSPVSNDQ GLLNHSNQTI LNKGLMHNIS YGQPHSLPEH ITGGISNSMR FIAPHSSGFG
501: TSSDHRYRWG SPPQHMNYPG YTGVSSSSSS TERPFTVRHG FPFAERQASL LGKYQHHVGS APSSIHFNTQ MNCYTGSPEI PLGFSDMGIN RNYNSAHGKA
601: NLGVSLPGNS SEQDFTGFGM SSMPTVPFGG SRGLQSVRPE PFAEQGRIHN HESHNQNQFI DGGRYHIDLD RIASGDEIRT TLIIKNIPNK YTYKMLVAEI
701: DEKHKGDYDF LCLPTDFKNK CNMGHAFINM VSPLHIVPFQ QTFNGKIWEK FNSGKVASLA YAEIQGKSAL ASYMQTPSSM KEQKQLFPEV SYHDDGQDAN
801: DHEQLFSSIW NITAPDSDWS YTMDLIENPR ENGNSKNAAE ESS
101: DALEILLPED ENELLPGLID ELNFTGLPDE LDDLEECDVF CTGGGMELDV ESQDNHAVDA SGMQISDRGA ANAFVPRKRP NTAGRVSVEH PNGEHPSRTL
201: FVRNINSSVE DSELSALFEP FGEIRSLYTA CKSRGFVMIS YYDIRAAHAA MRALQNTLLR KRTLDIHFSI PKENPSEKDM NQGTLVIFNV DTTVSNDELL
301: QLFGAYGEIR EIRETPNRRF HRFIEYYDVR DAETALKALN RSEIGGKCIK LELSRPGGAR RLSVPSQSQD LERTEVTNFY NQVGSHVANS PPGNWPIGSP
401: VKGSPSHAFT RPHGLGMVRP VNSDNMPGLA SILPAHPSSF HGFSPVSNDQ GLLNHSNQTI LNKGLMHNIS YGQPHSLPEH ITGGISNSMR FIAPHSSGFG
501: TSSDHRYRWG SPPQHMNYPG YTGVSSSSSS TERPFTVRHG FPFAERQASL LGKYQHHVGS APSSIHFNTQ MNCYTGSPEI PLGFSDMGIN RNYNSAHGKA
601: NLGVSLPGNS SEQDFTGFGM SSMPTVPFGG SRGLQSVRPE PFAEQGRIHN HESHNQNQFI DGGRYHIDLD RIASGDEIRT TLIIKNIPNK YTYKMLVAEI
701: DEKHKGDYDF LCLPTDFKNK CNMGHAFINM VSPLHIVPFQ QTFNGKIWEK FNSGKVASLA YAEIQGKSAL ASYMQTPSSM KEQKQLFPEV SYHDDGQDAN
801: DHEQLFSSIW NITAPDSDWS YTMDLIENPR ENGNSKNAAE ESS
Arabidopsis Description
ML2ML2 [Source:UniProtKB/TrEMBL;Acc:A0A178VQK0]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.