Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 5
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G61960.1 | EES16504 | AT3G08850.1 | 15720729 |
| AT5G61960.1 | OQU82706 | AT3G08850.1 | 15720729 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d035763_P003 | Maize | plastid | 90.46 | 78.06 |
| HORVU1Hr1G000530.2 | Barley | nucleus | 45.48 | 62.73 |
| Os05t0102800-01 | Rice | nucleus | 68.83 | 58.95 |
| TraesCS1B01G008000.1 | Wheat | nucleus | 64.18 | 56.09 |
| TraesCS1D01G002500.1 | Wheat | nucleus | 63.94 | 55.7 |
| TraesCS1A01G005800.2 | Wheat | nucleus | 63.57 | 53.66 |
| VIT_00s0239g00110.t01 | Wine grape | plastid | 6.48 | 48.18 |
| CDY30686 | Canola | nucleus | 24.94 | 38.49 |
| KRH45198 | Soybean | nucleus | 33.13 | 36.72 |
| EES05145 | Sorghum | nucleus | 44.5 | 36.51 |
| VIT_01s0150g00090.t01 | Wine grape | nucleus | 42.3 | 34.95 |
| VIT_17s0000g00240.t01 | Wine grape | nucleus | 42.3 | 34.67 |
| KRH59735 | Soybean | nucleus | 37.29 | 32.17 |
| PGSC0003DMT400005752 | Potato | nucleus | 38.26 | 32.07 |
| Solyc05g023740.2.1 | Tomato | nucleus | 37.9 | 31.89 |
| KRH41056 | Soybean | nucleus | 36.31 | 31.13 |
| AT5G07290.1 | Thale cress | nucleus | 33.99 | 30.65 |
| CDX98985 | Canola | nucleus | 33.13 | 30.62 |
| OQU81438 | Sorghum | plastid | 39.49 | 30.53 |
| Bra009274.1-P | Field mustard | nucleus | 32.89 | 30.4 |
| CDX70025 | Canola | nucleus | 32.89 | 30.29 |
| CDY30687 | Canola | nucleus | 31.66 | 30.29 |
| KRH63864 | Soybean | nucleus | 35.82 | 30.18 |
| AT5G61960.1 | Thale cress | nucleus | 33.74 | 30.16 |
| Bra029297.1-P | Field mustard | nucleus | 32.89 | 30.16 |
| Bra010044.1-P | Field mustard | nucleus | 33.37 | 29.8 |
| KRH54096 | Soybean | nucleus | 35.09 | 29.68 |
| CDX86947 | Canola | nucleus | 32.27 | 29.04 |
| CDY00238 | Canola | nucleus | 32.15 | 28.77 |
| EER89028 | Sorghum | nucleus | 26.16 | 25.33 |
| CDY72437 | Canola | nucleus | 7.09 | 23.11 |
| OQU89813 | Sorghum | nucleus, plastid | 7.7 | 17.12 |
| EES04542 | Sorghum | plastid | 6.85 | 16.14 |
| EES01930 | Sorghum | nucleus | 12.59 | 15.47 |
Protein Annotations
| MapMan:35.1 | EntrezGene:8065276 | EMBL:AY579885 | ProteinID:EES18829.1 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0005488 | ProteinID:KXG21001.1 | InterPro:MEI2-like_RRM3 | InterPro:Mei2-like_Rrm_C | EnsemblPlants:OQU77194 | ProteinID:OQU77194 |
| ProteinID:OQU77194.1 | PFAM:PF04059 | PANTHER:PTHR44127 | PANTHER:PTHR44127:SF7 | UniProt:Q6J735 | InterPro:RBD_domain_sf |
| EnsemblPlantsGene:SORBI_3009G001300 | SUPFAM:SSF54928 | unigene:Sbi.13570 | UniParc:UPI0000378672 | RefSeq:XP_002440399.1 | SEG:seg |
Description
hypothetical protein
Coordinates
chr9:-:145958..153440
Molecular Weight (calculated)
89241.2 Da
IEP (calculated)
6.614
GRAVY (calculated)
-0.653
Length
818 amino acids
Sequence
(BLAST)
(BLAST)
001: MVIASGAVDR SHLSPFVPLS ESSSSSFFSQ DLVPTERQVG FWKSSGSMVH HKGSEPIFTS PLDKVHPMGS SPAGGLEHQQ GQAFKGQMGM LNLGNLVGQQ
101: ENAPGIPSIS WDDVLSSSRS SLGLSTGGTA FVGPTSADQH VHDYGDCPSS SSYTEVFSSK SARLVASGVY GQSADANGSG CEGDEPLGSM KELEAQTIGD
201: LLPDDDDLIS GIIDGFEYTG LSNKDDADED IFYTGGGLEL EHDDSNNVDK FREVSFKSQL SGDVNEIYKA PTSCNKKFVE FYNTRAAQET LNDLNKGDMS
301: CSQIKVEHSY SGGAGSCFTE QCSGEQKQNA VPHQLKNSPL GTIGKLDPKS WEGSTVRNLY SPVRPQHDKA QHGFSVNAPQ KLSSPIRIES TRQHSNQTAL
401: GEPSGSLGHG NFGGGLQAFH PHSLPEYHNG ICNGSNSMTL NARNSNFRLT EGMDYNNHKV DHSDLHGHSS DQNEAFRATG IGSCPLHGHH YTWSNSNGFP
501: QSPSAPMLWS NFQQPVHVNC YPVMPPHMRR TAAHPMDQHH LGSAPNSVGG FANAHSFHPG SLESVGFPGS PQLYPDLSVF ASARGNYRET MFSPVSAGFP
601: SIQQIFHATN GRNPMVHVST SYDATNDRIR SRRHDGNAAQ SENKKQFELD LDRIAKGEDS RTTLMIKNIP NKYNCKLLLA VIDENHRGTY DFIYLPIDFK
701: NKCNVGYAFI NMTDPQHIIP FYKTFNGKKW EKFNSEKVAS LAYARIQGRN ALIAHFQNSS LMNEEKWCRP MLFHKDGPHA GDQEPFPVGS NVRSRSGRNR
801: PLTGSETTKE GSPSTSPN
101: ENAPGIPSIS WDDVLSSSRS SLGLSTGGTA FVGPTSADQH VHDYGDCPSS SSYTEVFSSK SARLVASGVY GQSADANGSG CEGDEPLGSM KELEAQTIGD
201: LLPDDDDLIS GIIDGFEYTG LSNKDDADED IFYTGGGLEL EHDDSNNVDK FREVSFKSQL SGDVNEIYKA PTSCNKKFVE FYNTRAAQET LNDLNKGDMS
301: CSQIKVEHSY SGGAGSCFTE QCSGEQKQNA VPHQLKNSPL GTIGKLDPKS WEGSTVRNLY SPVRPQHDKA QHGFSVNAPQ KLSSPIRIES TRQHSNQTAL
401: GEPSGSLGHG NFGGGLQAFH PHSLPEYHNG ICNGSNSMTL NARNSNFRLT EGMDYNNHKV DHSDLHGHSS DQNEAFRATG IGSCPLHGHH YTWSNSNGFP
501: QSPSAPMLWS NFQQPVHVNC YPVMPPHMRR TAAHPMDQHH LGSAPNSVGG FANAHSFHPG SLESVGFPGS PQLYPDLSVF ASARGNYRET MFSPVSAGFP
601: SIQQIFHATN GRNPMVHVST SYDATNDRIR SRRHDGNAAQ SENKKQFELD LDRIAKGEDS RTTLMIKNIP NKYNCKLLLA VIDENHRGTY DFIYLPIDFK
701: NKCNVGYAFI NMTDPQHIIP FYKTFNGKKW EKFNSEKVAS LAYARIQGRN ALIAHFQNSS LMNEEKWCRP MLFHKDGPHA GDQEPFPVGS NVRSRSGRNR
801: PLTGSETTKE GSPSTSPN
001: MPSDILEPRG VPTPSHFHED IRITPEKQFG FMKNNPMPEG GVDRSSNLPT SSWTSDSYQL SQQSSLSGAL PSFIPNGRTT TNDTHWESSL FSSSLSDLFS
101: RKLRLPRSDK LAFMSANREE EPSESLEEME AQTIGNLLPD EDDLFAEVVG EGVHKSRANG GDDLDDCDLF SSVGGMELDG DVFSSVSQRD GKRGSNVSTV
201: AEHPQGEILS RILFVRNVDS SIEDCELGVL FKQFGDVRAL HTAGKNRGFI MVSYYDIRAA QKAARALHGR LLRGRKLDIR YSIPKENPKE NSSEGALWVN
301: NLDSSISNEE LHGIFSSYGE IREVRRTMHE NSQVYIEFFD VRKAKVALQG LNGLEVAGRQ LKLAPTCPEG TSFWPQFASD DGEGGLPKMA FNNLSSAHMG
401: RHFPGILAST SIDGGSIRGM HNSVGSPMNS FIERHQSLDV PIGLPPSARV ISASKPVGLQ EFGNPFDNSK TGIQSMPNLH PHFPDYLDNF ASGSPYKSST
501: TFSEMVSDGQ KANEGFMMSN VRGVGVDGFN GGVIGSPINQ GSHRGNLNLW SNSNSQQHNQ SSGMMWPNSP SRVNGVPSQR IPPVTAFSRA SPLMVNMASS
601: PVHHHIGSAP VLNSPFWDRR QAYVAESPES SGFHLGSPGS MGFPGSSPSH PMDFGSHKVF SHVGGNRMEA NSKNAVLRSS RQMPHLFTGR SPMLSVSGSF
701: DLPNERYRNL SHRRSESNSS NAEKKLYELD VDRILRGEDS RTTLMIKNIP NKYTSKMLLA AIDEYCKGTY DFLYLPIDFK NKCNVGYAFI NLIEPENIVP
801: FYKAFNGKKW EKFNSEKVAS LAYGRIQGKS ALIAHFQNSS LMNEDKRCRP ILFHTAGPNA GDQEPFPMGS NIRSRPGKHR TNSIENYTNF SSSSDNRDEP
901: ANGNDSM
101: RKLRLPRSDK LAFMSANREE EPSESLEEME AQTIGNLLPD EDDLFAEVVG EGVHKSRANG GDDLDDCDLF SSVGGMELDG DVFSSVSQRD GKRGSNVSTV
201: AEHPQGEILS RILFVRNVDS SIEDCELGVL FKQFGDVRAL HTAGKNRGFI MVSYYDIRAA QKAARALHGR LLRGRKLDIR YSIPKENPKE NSSEGALWVN
301: NLDSSISNEE LHGIFSSYGE IREVRRTMHE NSQVYIEFFD VRKAKVALQG LNGLEVAGRQ LKLAPTCPEG TSFWPQFASD DGEGGLPKMA FNNLSSAHMG
401: RHFPGILAST SIDGGSIRGM HNSVGSPMNS FIERHQSLDV PIGLPPSARV ISASKPVGLQ EFGNPFDNSK TGIQSMPNLH PHFPDYLDNF ASGSPYKSST
501: TFSEMVSDGQ KANEGFMMSN VRGVGVDGFN GGVIGSPINQ GSHRGNLNLW SNSNSQQHNQ SSGMMWPNSP SRVNGVPSQR IPPVTAFSRA SPLMVNMASS
601: PVHHHIGSAP VLNSPFWDRR QAYVAESPES SGFHLGSPGS MGFPGSSPSH PMDFGSHKVF SHVGGNRMEA NSKNAVLRSS RQMPHLFTGR SPMLSVSGSF
701: DLPNERYRNL SHRRSESNSS NAEKKLYELD VDRILRGEDS RTTLMIKNIP NKYTSKMLLA AIDEYCKGTY DFLYLPIDFK NKCNVGYAFI NLIEPENIVP
801: FYKAFNGKKW EKFNSEKVAS LAYGRIQGKS ALIAHFQNSS LMNEDKRCRP ILFHTAGPNA GDQEPFPMGS NIRSRPGKHR TNSIENYTNF SSSSDNRDEP
901: ANGNDSM
Arabidopsis Description
ML4Protein MEI2-like 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9LYN7]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.