CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 2
plastid 2
mitochondrion 2
cytosol 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d053860_P001	Maize	plastid	74.06	73.64
HORVU6Hr1G025080.3	Barley	mitochondrion	21.33	43.27
TraesCS6A01G131000.1	Wheat	mitochondrion	20.46	40.34
VIT_03s0038g00390.t01	Wine grape	cytosol	14.41	35.71
PGSC0003DMT400008115	Potato	cytosol	13.54	32.64
AT1G37140.1	Thale cress	plastid	19.88	29.61
GSMUA_Achr5P05840_001	Banana	cytosol, mitochondrion, nucleus, plasma membrane	25.07	29.39
Solyc01g110230.1.1	Tomato	cytosol	20.17	27.56
PGSC0003DMT400091031	Potato	cytosol	19.6	27.42
Solyc01g110260.1.1	Tomato	cytosol	14.7	27.42
Solyc01g110220.1.1	Tomato	cytosol	19.02	27.05
Bra035509.1-P	Field mustard	cytosol, plastid	18.44	26.78
Solyc05g056360.1.1	Tomato	cytosol	25.36	26.67
Solyc01g110240.1.1	Tomato	cytosol, peroxisome, plastid	15.27	26.5
Solyc01g110210.1.1	Tomato	nucleus	19.6	26.46
CDY44647	Canola	nucleus, plastid	18.16	26.36
CDY62093	Canola	nucleus, plastid	18.73	26.0
PGSC0003DMT400086312	Potato	cytosol, nucleus, plasma membrane, plastid	18.44	25.81
KRH18810	Soybean	cytosol	19.6	25.28
Os02t0157900-00	Rice	mitochondrion, plastid	28.24	25.19
Bra028677.1-P	Field mustard	nucleus, plastid	20.17	25.0
KRH16604	Soybean	cytosol, nucleus, peroxisome	19.6	25.0
CDY14020	Canola	plastid	20.17	25.0
Solyc01g110200.1.1	Tomato	plastid	19.88	24.91
PGSC0003DMT400090567	Potato	plastid	21.33	24.75
PGSC0003DMT400060283	Potato	cytosol	21.04	24.25
TraesCS6B01G159300.2	Wheat	plastid	28.24	23.9
PGSC0003DMT400085334	Potato	peroxisome	18.44	23.88
CDY40768	Canola	nucleus	19.88	22.85
AT5G07930.3	Thale cress	nucleus	19.31	22.79
VIT_18s0001g03840.t01	Wine grape	mitochondrion	19.31	22.11
OQU89813	Sorghum	nucleus, plastid	22.77	21.47
KRH24390	Soybean	nucleus	20.46	20.11
KRH29371	Soybean	nucleus	21.04	19.84
EES01930	Sorghum	nucleus	26.8	13.96
EER89028	Sorghum	nucleus	19.02	7.81
OQU77194	Sorghum	plastid	16.14	6.85
EES05145	Sorghum	nucleus	19.02	6.62
OQU81438	Sorghum	plastid	18.16	5.95

Protein Annotations

EnsemblPlants:EES04542	EnsemblPlantsGene:SORBI_3004G046600	InterPro:Mei2-like	InterPro:Mei2-like_Rrm_C	PANTHER:PTHR45087	PFAM:PF04059
ProteinID:EES04542	ProteinID:EES04542.1	RefSeq:XP_002451566.1	SEG:seg	UniParc:UPI0001A854E7	UniProt:C5XVC4
MapMan:35.1	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr4:+:3794263..3798483

Molecular Weight (calculated)

37810.3 Da

IEP (calculated)

10.924

GRAVY (calculated)

-0.340

Length

347 amino acids

Sequence
(BLAST)

001: MSATKLNPFA APFPCPYPLA PPAPPPFPLA DACPPRFPFV TYCCVASPQG HLGLGFCFPV QQCSSPPALR KGVPAAPPHG LPPHKLMAAF SGPCRAGKQR
101: QALPPVPMKP VASAAAADAA PAQVPAAKRK PRMARLLKAE SWSQAKAPRP RKARGPRARL TAQREAPPTS LYTKRPRDWV KPEPSELGDC TTIMLRNIPN
201: KLRSGDMISL LDEQCARANR AAGVVVAAYD VLYLPMDFRK EANFGYAFIN LTTTAAAKEL YCSLQNCCWK VHGSKKVINI DRATQQGKAM LVRHLEKMRL
301: ERAKDEFLPV EFSPPRDGVN VPAAPRRIRM ARRRGARTAS KAKAISS

Best Arabidopsis Sequence Match ( AT1G37140.1 )
(BLAST)

001: METKKPTKSL NPYAPAFTPP SRSPPLFNFN KPFPCYNKPF KAITGAHVKP EKNPFVRYGF CHRRCLPPRL LKKPLPENKL AGRTSVMVKN IPNCLGRMDL
101: LRILDNHCRK HNEKSSYDFL YLPMDFGKRA NLGYAFVNFT SSLAAERFRR EFENFSWDNI GFRKKICEIT VAKYQGKEEL TRHFRNSRFT CHTDDYLPVV
201: LSPPSNGFTA YTLTKLGYRV GALGGGSRNA SLR

Arabidopsis Description

MCT1MEI2 C-terminal RRM only like 1 [Source:UniProtKB/TrEMBL;Acc:Q4PT05]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.