Factsheet for PGSC0003DMT400090567

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
mitochondrion 2
cytosol 1
nucleus 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g110200.1.1	Tomato	plastid	83.61	90.25
PGSC0003DMT400008115	Potato	cytosol	39.13	81.25
PGSC0003DMT400085334	Potato	peroxisome	45.82	51.12
VIT_03s0038g00390.t01	Wine grape	cytosol	22.07	47.14
PGSC0003DMT400091031	Potato	cytosol	37.12	44.76
PGSC0003DMT400086312	Potato	cytosol, nucleus, plasma membrane, plastid	33.44	40.32
GSMUA_Achr11P...	Banana	cytosol	18.73	35.0
HORVU6Hr1G025080.3	Barley	mitochondrion	18.73	32.75
TraesCS6A01G131000.1	Wheat	mitochondrion	17.73	30.11
CDY14020	Canola	plastid	28.09	30.0
Bra028677.1-P	Field mustard	nucleus, plastid	27.42	29.29
CDY40768	Canola	nucleus	27.42	27.15
GSMUA_Achr5P05840_001	Banana	cytosol, mitochondrion, nucleus, plasma membrane	26.09	26.35
AT5G07930.3	Thale cress	nucleus	25.42	25.85
TraesCS5D01G325300.1	Wheat	mitochondrion, plasma membrane	20.74	24.7
Os09t0531200-01	Rice	cytosol	25.08	23.22
TraesCS7D01G364300.1	Wheat	nucleus, plasma membrane, plastid	24.75	23.2
TraesCS7B01G269200.1	Wheat	mitochondrion, nucleus, peroxisome, plastid	24.41	23.17
KRH24390	Soybean	nucleus	26.42	22.38
KRH29371	Soybean	nucleus	27.42	22.28
TraesCS5D01G325200.1	Wheat	cytosol, nucleus, plasma membrane, plastid	24.75	22.22
HORVU5Hr1G081420.2	Barley	mitochondrion	24.75	21.51
EES04542	Sorghum	plastid	24.75	21.33
Zm00001d006207_P001	Maize	plastid	23.75	21.26
Zm00001d053860_P001	Maize	plastid	24.75	21.2
PGSC0003DMT400060283	Potato	cytosol	20.07	19.93
OQU89813	Sorghum	nucleus, plastid	23.41	19.02
TraesCS5B01G319500.1	Wheat	plastid	24.75	18.83
TraesCS5A01G319000.1	Wheat	cytosol, nucleus, plasma membrane, plastid	15.05	18.0
TraesCS6B01G159300.2	Wheat	plastid	23.75	17.32
Os02t0157900-00	Rice	mitochondrion, plastid	22.41	17.22
PGSC0003DMT400027957	Potato	nucleus	12.37	7.64
PGSC0003DMT400054712	Potato	nucleus	21.07	7.42
PGSC0003DMT400044564	Potato	nucleus	21.07	7.41
PGSC0003DMT400007982	Potato	nucleus	20.74	7.29
PGSC0003DMT400005752	Potato	nucleus	19.06	5.84

Protein Annotations

EnsemblPlants:PGSC0003DMT400090567	EnsemblPlantsGene:PGSC0003DMG400040138	Gene3D:3.30.70.330	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488
InterPro:IPR012677	InterPro:Mei2-like	InterPro:Mei2-like_Rrm_C	InterPro:Nucleotide-bd_a/b_plait_sf	InterPro:RBD_domain_sf	PANTHER:PTHR45087
PFAM:PF04059	PGSC:PGSC0003DMG400040138	SEG:seg	SUPFAM:SSF54928	UniParc:UPI000295DB21	UniProt:M1DKP1
MapMan:35.1	:	:	:	:	:

Description

TEL1 (TERMINAL EAR1-LIKE 1); RNA binding / nucleic acid binding / nucleotide binding [Source:PGSC_GENE;Acc:PGSC0003DMG400040138]

Coordinates

chr1:+:86548402..86549649

Molecular Weight (calculated)

34187.0 Da

IEP (calculated)

10.359

GRAVY (calculated)

-0.543

Length

299 amino acids

Sequence
(BLAST)

001: MAAVLRSLLN PNASEYIPIS TPLPPVLLLP LPPPHRTVGS LPRESVRPPS VIRLGPNIPP RLRNDYIARR GGGGGRGFSR SSNGNRGVFG RGNCSNTEGR
101: LVWRRKVGNH DQRRSVCYNE MKKHDVIPIS WTHKNNTTIM IKNIPYHYNR EMLMQFLDEH CYLESKKARD SNGENIHVFA YDFLYLPMDF KKKRSKGYAF
201: VNFTDQRTVW NFFYVFNDKL NVFPGSTRSA KIVTAKIQGK EALVNRFKQT RFECESEGFL PVWFSPARDG SGESVQMITV GQYKVTPYSQ ETLTLGNCY

Best Arabidopsis Sequence Match ( AT5G07930.1 )
(BLAST)

001: MASSDDPAPE NNHVSVLARQ ARNPPTHFFF PHNPSPRTYY FSAPPQIYFI SDIYLPPPPS IWVYYPLWYI NPNPNVYEST QELPQRYSPN PSQEMTLPPT
101: SSRRVFGRRS YELCEKVTWR TSIKPEVESN GDHITTVMLR NIPNRYTREM MIQFMDKHCE EANKSGKNEE FTISAYDFIY LPIDFRTTMN KGYAFVNFTN
201: AKAVSKFKAA CNNKPWCHFY SKKELEITYA RIQANELVKR FQHMTYPEEA YSAVCFSPAR SGGKDTVQTT MVGKCNEPVC SV

Arabidopsis Description

MCT2MEI2 C-terminal RRM only like 2 [Source:UniProtKB/TrEMBL;Acc:F4K9I2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.