Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- plastid 1
- mitochondrion 4
- nucleus 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU6Hr1G025080.3 | Barley | mitochondrion | 80.68 | 83.04 |
| VIT_03s0038g00390.t01 | Wine grape | cytosol | 31.25 | 39.29 |
| TraesCS6B01G159300.2 | Wheat | plastid | 89.2 | 38.29 |
| PGSC0003DMT400008115 | Potato | cytosol | 28.98 | 35.42 |
| Solyc01g110260.1.1 | Tomato | cytosol | 30.11 | 28.49 |
| AT1G37140.1 | Thale cress | plastid | 35.23 | 26.61 |
| Bra035509.1-P | Field mustard | cytosol, plastid | 35.8 | 26.36 |
| CDY44647 | Canola | nucleus, plastid | 35.23 | 25.94 |
| CDY62093 | Canola | nucleus, plastid | 35.8 | 25.2 |
| Os02t0157900-00 | Rice | mitochondrion, plastid | 55.11 | 24.94 |
| GSMUA_Achr5P05840_001 | Banana | cytosol, mitochondrion, nucleus, plasma membrane | 41.48 | 24.66 |
| Solyc01g110240.1.1 | Tomato | cytosol, peroxisome, plastid | 24.43 | 21.5 |
| Bra028677.1-P | Field mustard | nucleus, plastid | 32.95 | 20.71 |
| CDY14020 | Canola | plastid | 32.95 | 20.71 |
| EES04542 | Sorghum | plastid | 40.34 | 20.46 |
| Zm00001d053860_P001 | Maize | plastid | 40.34 | 20.34 |
| Solyc05g056360.1.1 | Tomato | cytosol | 37.5 | 20.0 |
| Solyc01g110200.1.1 | Tomato | plastid | 31.25 | 19.86 |
| KRH16604 | Soybean | cytosol, nucleus, peroxisome | 30.68 | 19.85 |
| PGSC0003DMT400091031 | Potato | cytosol | 27.84 | 19.76 |
| KRH18810 | Soybean | cytosol | 30.11 | 19.7 |
| CDY40768 | Canola | nucleus | 32.95 | 19.21 |
| PGSC0003DMT400086312 | Potato | cytosol, nucleus, plasma membrane, plastid | 26.7 | 18.95 |
| Solyc01g110230.1.1 | Tomato | cytosol | 27.27 | 18.9 |
| PGSC0003DMT400085334 | Potato | peroxisome | 27.84 | 18.28 |
| PGSC0003DMT400090567 | Potato | plastid | 30.11 | 17.73 |
| AT5G07930.3 | Thale cress | nucleus | 29.55 | 17.69 |
| Solyc01g110210.1.1 | Tomato | nucleus | 25.57 | 17.51 |
| KRH24390 | Soybean | nucleus | 34.09 | 17.0 |
| PGSC0003DMT400060283 | Potato | cytosol | 28.98 | 16.94 |
| Solyc01g110220.1.1 | Tomato | cytosol | 23.3 | 16.8 |
| KRH29371 | Soybean | nucleus | 34.66 | 16.58 |
| VIT_18s0001g03840.t01 | Wine grape | mitochondrion | 27.84 | 16.17 |
| TraesCS5A01G319000.1 | Wheat | cytosol, nucleus, plasma membrane, plastid | 15.34 | 10.8 |
| TraesCS3A01G413400.1 | Wheat | nucleus | 38.64 | 10.0 |
| TraesCS2A01G287900.4 | Wheat | nucleus | 26.7 | 5.09 |
| TraesCS7A01G003100.1 | Wheat | plastid | 24.43 | 4.95 |
| TraesCS1A01G005800.2 | Wheat | nucleus | 27.27 | 4.95 |
| TraesCS4A01G495500.1 | Wheat | plastid | 24.43 | 4.91 |
Protein Annotations
| EnsemblPlants:TraesCS6A01G131000.1 | EnsemblPlantsGene:TraesCS6A01G131000 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 | InterPro:Mei2-like |
| InterPro:Mei2-like_Rrm_C | InterPro:RBD_domain_sf | PANTHER:PTHR45087 | PFAM:PF04059 | SEG:seg | SUPFAM:SSF54928 |
| TIGR:cd12277 | MapMan:35.1 | : | : | : | : |
Description
No Description!
Coordinates
chr6A:+:103251416..103252296
Molecular Weight (calculated)
19844.0 Da
IEP (calculated)
11.483
GRAVY (calculated)
-0.452
Length
176 amino acids
Sequence
(BLAST)
(BLAST)
001: MIRNIPNKLT RPSMMKLLDD HCARVNRRRG PAAYDFLYLP MDFSSRQRCS NKGYAFVNFT TAEAARGLHY ALHGRGWHRS LGSAKIINIA AAYMQGRHRL
101: VRHFSRSTFA CHTDEYLPAV FSPPRDGTAD PPPAEPRHLG RRVPPRVPAV QPAQQLVWVR RGEAIASQLA TPSMVT
101: VRHFSRSTFA CHTDEYLPAV FSPPRDGTAD PPPAEPRHLG RRVPPRVPAV QPAQQLVWVR RGEAIASQLA TPSMVT
001: METKKPTKSL NPYAPAFTPP SRSPPLFNFN KPFPCYNKPF KAITGAHVKP EKNPFVRYGF CHRRCLPPRL LKKPLPENKL AGRTSVMVKN IPNCLGRMDL
101: LRILDNHCRK HNEKSSYDFL YLPMDFGKRA NLGYAFVNFT SSLAAERFRR EFENFSWDNI GFRKKICEIT VAKYQGKEEL TRHFRNSRFT CHTDDYLPVV
201: LSPPSNGFTA YTLTKLGYRV GALGGGSRNA SLR
101: LRILDNHCRK HNEKSSYDFL YLPMDFGKRA NLGYAFVNFT SSLAAERFRR EFENFSWDNI GFRKKICEIT VAKYQGKEEL TRHFRNSRFT CHTDDYLPVV
201: LSPPSNGFTA YTLTKLGYRV GALGGGSRNA SLR
Arabidopsis Description
MCT1MEI2 C-terminal RRM only like 1 [Source:UniProtKB/TrEMBL;Acc:Q4PT05]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.