Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 2
- golgi 1
- mitochondrion 2
- cytosol 2
- nucleus 1
- plastid 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5D01G325300.1 | Wheat | mitochondrion, plasma membrane | 41.18 | 52.99 |
| TraesCS7D01G364300.1 | Wheat | nucleus, plasma membrane, plastid | 46.75 | 47.34 |
| TraesCS7B01G269200.1 | Wheat | mitochondrion, nucleus, peroxisome, plastid | 46.13 | 47.3 |
| TraesCS5D01G325200.1 | Wheat | cytosol, nucleus, plasma membrane, plastid | 45.2 | 43.84 |
| HORVU5Hr1G081420.2 | Barley | mitochondrion | 43.96 | 41.28 |
| VIT_03s0038g00390.t01 | Wine grape | cytosol | 16.72 | 38.57 |
| PGSC0003DMT400008115 | Potato | cytosol | 16.72 | 37.5 |
| TraesCS5B01G319500.1 | Wheat | plastid | 44.58 | 36.64 |
| TraesCS5A01G319000.1 | Wheat | cytosol, nucleus, plasma membrane, plastid | 26.93 | 34.8 |
| Zm00001d006207_P001 | Maize | plastid | 34.67 | 33.53 |
| OQU89813 | Sorghum | nucleus, plastid | 38.08 | 33.42 |
| Solyc01g110260.1.1 | Tomato | cytosol | 17.34 | 30.11 |
| GSMUA_Achr5P05840_001 | Banana | cytosol, mitochondrion, nucleus, plasma membrane | 26.93 | 29.39 |
| AT1G37140.1 | Thale cress | plastid | 19.5 | 27.04 |
| Solyc01g110240.1.1 | Tomato | cytosol, peroxisome, plastid | 16.72 | 27.0 |
| Os02t0157900-00 | Rice | mitochondrion, plastid | 32.51 | 26.99 |
| Bra035509.1-P | Field mustard | cytosol, plastid | 19.81 | 26.78 |
| Solyc01g110200.1.1 | Tomato | plastid | 22.91 | 26.71 |
| Solyc01g110230.1.1 | Tomato | cytosol | 20.74 | 26.38 |
| CDY44647 | Canola | nucleus, plastid | 19.5 | 26.36 |
| CDY14020 | Canola | plastid | 22.29 | 25.71 |
| KRH18810 | Soybean | cytosol | 21.36 | 25.65 |
| CDY62093 | Canola | nucleus, plastid | 19.81 | 25.6 |
| PGSC0003DMT400086312 | Potato | cytosol, nucleus, plasma membrane, plastid | 19.5 | 25.4 |
| Bra028677.1-P | Field mustard | nucleus, plastid | 21.98 | 25.36 |
| Solyc05g056360.1.1 | Tomato | cytosol | 25.7 | 25.15 |
| PGSC0003DMT400090567 | Potato | plastid | 23.22 | 25.08 |
| PGSC0003DMT400085334 | Potato | peroxisome | 20.74 | 25.0 |
| KRH16604 | Soybean | cytosol, nucleus, peroxisome | 20.74 | 24.63 |
| KRH29371 | Soybean | nucleus | 27.55 | 24.18 |
| PGSC0003DMT400091031 | Potato | cytosol | 18.27 | 23.79 |
| KRH24390 | Soybean | nucleus | 25.7 | 23.51 |
| CDY40768 | Canola | nucleus | 21.98 | 23.51 |
| Solyc01g110210.1.1 | Tomato | nucleus | 18.27 | 22.96 |
| Solyc01g110220.1.1 | Tomato | cytosol | 17.03 | 22.54 |
| AT5G07930.3 | Thale cress | nucleus | 20.43 | 22.45 |
| PGSC0003DMT400060283 | Potato | cytosol | 20.74 | 22.26 |
| VIT_18s0001g03840.t01 | Wine grape | mitochondrion | 17.96 | 19.14 |
| Os01t0907900-01 | Rice | nucleus | 28.17 | 13.32 |
| Os02t0319100-01 | Rice | nucleus | 19.2 | 7.64 |
| Os02t0719800-02 | Rice | plasma membrane | 19.5 | 7.43 |
| Os05t0102800-01 | Rice | nucleus | 19.5 | 6.6 |
| Os02t0517531-01 | Rice | nucleus, plasma membrane | 19.81 | 6.39 |
Protein Annotations
| Gene3D:3.30.70.330 | MapMan:35.1 | EntrezGene:4347668 | EMBL:AB244281 | ProteinID:BAD46261.1 | ProteinID:BAF25668.1 |
| ProteinID:BAT09101.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 | InterPro:IPR012677 | InterPro:Mei2-like |
| InterPro:Mei2-like_Rrm_C | InterPro:Nucleotide-bd_a/b_plait_sf | EnsemblPlantsGene:Os09g0531200 | EnsemblPlants:Os09t0531200-01 | PFAM:PF04059 | PANTHER:PTHR45087 |
| UniProt:Q652K6 | InterPro:RBD_domain_sf | SUPFAM:SSF54928 | UniParc:UPI00003FF3DD | RefSeq:XP_015611521.1 | SEG:seg |
Description
ML6RNA recognition motif 2 domain containing protein. (Os09t0531200-01)
Coordinates
chr9:-:20811366..20813170
Molecular Weight (calculated)
34857.5 Da
IEP (calculated)
9.304
GRAVY (calculated)
-0.054
Length
323 amino acids
Sequence
(BLAST)
(BLAST)
001: MSCLSRLNAS AAPWEPPVAR AMAVEQYCPP PQSLLPPPPL PPVAVPTTCG CAACLQGCFV PVGVQAAFPH AAAGCAPPPP VMPVMIVYRV VQPPPPAAHA
101: TRCQITEIED GGGVETAKAV DGDEPQPFIR TVRSTRRRKA AAIRLPKAFR AALLPPPPPP CALGFTATTT SLMIRNIPNK FLKARLMAIL DQHCADENGK
201: CHRRGGGGGR SVVKSEYDFF YVPIDFKTGF NKGYAFVNMT TATAARRLRA FLQDHRWDAA MSGKVCDVVP AAIQGLDAFV AHFSASCFPC RTKEFLPVWF
301: EPPRDGEQQT KAHVVGRLVV RPR
101: TRCQITEIED GGGVETAKAV DGDEPQPFIR TVRSTRRRKA AAIRLPKAFR AALLPPPPPP CALGFTATTT SLMIRNIPNK FLKARLMAIL DQHCADENGK
201: CHRRGGGGGR SVVKSEYDFF YVPIDFKTGF NKGYAFVNMT TATAARRLRA FLQDHRWDAA MSGKVCDVVP AAIQGLDAFV AHFSASCFPC RTKEFLPVWF
301: EPPRDGEQQT KAHVVGRLVV RPR
001: METKKPTKSL NPYAPAFTPP SRSPPLFNFN KPFPCYNKPF KAITGAHVKP EKNPFVRYGF CHRRCLPPRL LKKPLPENKL AGRTSVMVKN IPNCLGRMDL
101: LRILDNHCRK HNEKSSYDFL YLPMDFGKRA NLGYAFVNFT SSLAAERFRR EFENFSWDNI GFRKKICEIT VAKYQGKEEL TRHFRNSRFT CHTDDYLPVV
201: LSPPSNGFTA YTLTKLGYRV GALGGGSRNA SLR
101: LRILDNHCRK HNEKSSYDFL YLPMDFGKRA NLGYAFVNFT SSLAAERFRR EFENFSWDNI GFRKKICEIT VAKYQGKEEL TRHFRNSRFT CHTDDYLPVV
201: LSPPSNGFTA YTLTKLGYRV GALGGGSRNA SLR
Arabidopsis Description
MCT1MEI2 C-terminal RRM only like 1 [Source:UniProtKB/TrEMBL;Acc:Q4PT05]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.