CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH00387
KRH40797
KRH40804

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G61960.1	KRH00387	AT3G08850.1	15720729
AT5G61960.1	KRH40797	AT3G08850.1	15720729
AT5G61960.1	KRH40804	AT3G08850.1	15720729

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH41056	Soybean	nucleus	95.36	94.76
KRH63864	Soybean	nucleus	74.47	72.71
KRH54096	Soybean	nucleus	73.73	72.29
VIT_17s0000g00240.t01	Wine grape	nucleus	58.02	55.11
CDY30686	Canola	nucleus	27.0	48.3
AT5G61960.1	Thale cress	nucleus	46.2	47.87
CDY30687	Canola	nucleus	42.83	47.49
Bra009274.1-P	Field mustard	nucleus	44.2	47.34
CDX70025	Canola	nucleus	44.2	47.18
CDX98985	Canola	nucleus	43.99	47.12
Bra029297.1-P	Field mustard	nucleus	44.3	47.09
AT5G07290.1	Thale cress	nucleus	44.94	46.97
Bra010044.1-P	Field mustard	nucleus	45.04	46.62
CDY00238	Canola	nucleus	43.99	45.62
CDX86947	Canola	nucleus	43.57	45.43
KRH45198	Soybean	nucleus	33.86	43.5
HORVU1Hr1G000530.2	Barley	nucleus	26.37	42.16
CDY72437	Canola	nucleus	10.87	41.04
KRG98918	Soybean	plastid	36.5	40.37
KRH46056	Soybean	nucleus, plastid	36.08	39.95
KRH12823	Soybean	nucleus	35.65	39.21
KRH37781	Soybean	nucleus	35.55	39.1
Os05t0102800-01	Rice	nucleus	38.5	38.22
TraesCS1B01G008000.1	Wheat	nucleus	37.55	38.03
TraesCS1D01G002500.1	Wheat	nucleus	37.66	38.02
Zm00001d035763_P003	Maize	plastid	37.87	37.87
OQU77194	Sorghum	plastid	32.17	37.29
TraesCS1A01G005800.2	Wheat	nucleus	36.92	36.12
KRH31364	Soybean	cytosol, nucleus	5.7	31.21
KRG97510	Soybean	nucleus	14.56	25.6
KRH16604	Soybean	cytosol, nucleus, peroxisome	6.96	24.26
KRH31365	Soybean	nucleus	8.02	23.38
KRH18810	Soybean	cytosol	6.12	21.56
KRH24390	Soybean	nucleus	6.75	18.13
KRH29371	Soybean	nucleus	6.86	17.66

Protein Annotations

EntrezGene:106798747	Gene3D:3.30.70.330	MapMan:35.1	UniProt:A0A0R0JYR4	EMBL:ACUP02003338	ncoils:Coil
EnsemblPlantsGene:GLYMA_05G200300	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	InterPro:IPR000504
InterPro:IPR012677	EnsemblPlants:KRH59735	ProteinID:KRH59735	ProteinID:KRH59735.1	InterPro:MEI2-like_RRM3	InterPro:MEI2_like_RRM1
InterPro:Mei2-like_Rrm_C	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFAM:PF04059	PFscan:PS50102	PANTHER:PTHR44127
PANTHER:PTHR44127:SF6	InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360	SUPFAM:SSF54928	UniParc:UPI0006EDF2CA
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr5:-:38390264..38401841

Molecular Weight (calculated)

104313.0 Da

IEP (calculated)

6.512

GRAVY (calculated)

-0.573

Length

948 amino acids

Sequence
(BLAST)

001: MPFQIMDQRG VSASSHFFDD ISFRSERNVG LQKPKSINDH YPQGNNGMVA SPGSILNATP PLDVNAKVGL LVPQASLPED SIHSTESSNC RPKSLSDACL
101: QSAPTSYGLI GNKIVTNAAP CESSLFSSSM SEIFSQKLRL FGNDVRSDHL INADSPPEEE PYKSLEEMEA DTIGNLLPDE DDLFSGVVDE LGCSSHARTN
201: DDFEDFDLFS SGGGMEMEGD EHLSSGKRIS ALDGDFGFFG GYKGKLPFVE QPSRTLFVRN INSNVDDSEL KALFEQYGDI RTIYTASKHR GFVMISYQDL
301: RAAQNAMQEL QNRPLRSRKL DIHYSIPKVN APEKDIGHGT LMLSGLDSPV LDDELKQIFG FYGEIKEIYE YPEMNNHKFI EFYDVRAAEA ALRALNKIDI
401: SGKQIKLEPG HPSLMHQSRK GQEERDLGQS IIDNLSSRQK ATVPSGVIGS GCFENGYNQR FQSTVRQPLN AFMDNAFIHV NSGIHNTVRG APAGKVSSVC
501: ESSSFIDAMN FASGSRFHPH SLPEYRDSLA NGSPYNFSSS ISNMANNIGA GATEASDGRH IQGMGSTGNL AEFNAGGNGI RPHHGLYHMW NSSNLQQQTS
601: SSTMLWQKSP SFVNDASSPG LPQMSSFART PPHMLRTPHM MDHHVGSAPV VTASPWERKN SYLGGSPEAS GFRLGSLGSG GFHGSWQMHP LDFPSHNMFS
701: HVGGNGTELT SNAGQNSPKQ LSHVFPVRHP MSSMSKFDAS NERMRNLYHR RNEANTNNVD KKLYELDLGR ILRGEDSRTT LMIKNIPNKY TSKMLLAAID
801: EQCKGTYDFL YLPIDFKNKC NVGYAFINMI DPGQIIPFHQ AFDGKKWEKF NSEKVASLAY ARIQGKASLI AHFQNSSLMN EDKRCRPILF HTDGPNAGDP
901: EPFPMGANIR LRPGKSRTAG NEENRSQGSP STLSSGEDAN GIDSSKNT

Best Arabidopsis Sequence Match ( AT5G07290.1 )
(BLAST)

001: MPSDILEPRG VPTPSHFHED IRITPEKQFG FMKNNPMPEG GVDRSSNLPT SSWTSDSYQL SQQSSLSGAL PSFIPNGRTT TNDTHWESSL FSSSLSDLFS
101: RKLRLPRSDK LAFMSANREE EPSESLEEME AQTIGNLLPD EDDLFAEVVG EGVHKSRANG GDDLDDCDLF SSVGGMELDG DVFSSVSQRD GKRGSNVSTV
201: AEHPQGEILS RILFVRNVDS SIEDCELGVL FKQFGDVRAL HTAGKNRGFI MVSYYDIRAA QKAARALHGR LLRGRKLDIR YSIPKENPKE NSSEGALWVN
301: NLDSSISNEE LHGIFSSYGE IREVRRTMHE NSQVYIEFFD VRKAKVALQG LNGLEVAGRQ LKLAPTCPEG TSFWPQFASD DGEGGLPKMA FNNLSSAHMG
401: RHFPGILAST SIDGGSIRGM HNSVGSPMNS FIERHQSLDV PIGLPPSARV ISASKPVGLQ EFGNPFDNSK TGIQSMPNLH PHFPDYLDNF ASGSPYKSST
501: TFSEMVSDGQ KANEGFMMSN VRGVGVDGFN GGVIGSPINQ GSHRGNLNLW SNSNSQQHNQ SSGMMWPNSP SRVNGVPSQR IPPVTAFSRA SPLMVNMASS
601: PVHHHIGSAP VLNSPFWDRR QAYVAESPES SGFHLGSPGS MGFPGSSPSH PMDFGSHKVF SHVGGNRMEA NSKNAVLRSS RQMPHLFTGR SPMLSVSGSF
701: DLPNERYRNL SHRRSESNSS NAEKKLYELD VDRILRGEDS RTTLMIKNIP NKYTSKMLLA AIDEYCKGTY DFLYLPIDFK NKCNVGYAFI NLIEPENIVP
801: FYKAFNGKKW EKFNSEKVAS LAYGRIQGKS ALIAHFQNSS LMNEDKRCRP ILFHTAGPNA GDQEPFPMGS NIRSRPGKHR TNSIENYTNF SSSSDNRDEP
901: ANGNDSM

Arabidopsis Description

ML4Protein MEI2-like 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9LYN7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.