Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Bra001342.1-P | |
| Bra029726.1-P |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G61960.1 | Bra001342.1-P | AT3G08850.1 | 15720729 |
| AT5G61960.1 | Bra029726.1-P | AT3G08850.1 | 15720729 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY30686 | Canola | nucleus | 58.41 | 98.3 |
| Bra010044.1-P | Field mustard | nucleus | 88.23 | 85.92 |
| AT5G61960.1 | Thale cress | nucleus | 87.0 | 84.81 |
| Bra009274.1-P | Field mustard | nucleus | 68.61 | 69.15 |
| VIT_00s0239g00110.t01 | Wine grape | plastid | 7.4 | 60.0 |
| KRH59735 | Soybean | nucleus | 47.09 | 44.3 |
| KRH41056 | Soybean | nucleus | 47.2 | 44.13 |
| KRH63864 | Soybean | nucleus | 47.31 | 43.46 |
| KRH54096 | Soybean | nucleus | 46.3 | 42.71 |
| Bra013285.1-P | Field mustard | nucleus | 29.37 | 39.46 |
| Bra030135.1-P | Field mustard | nucleus | 31.61 | 38.32 |
| Bra032316.1-P | Field mustard | nucleus | 33.41 | 37.63 |
| HORVU1Hr1G000530.2 | Barley | nucleus | 24.78 | 37.27 |
| Os05t0102800-01 | Rice | nucleus | 38.34 | 35.81 |
| Zm00001d035763_P003 | Maize | plastid | 37.33 | 35.13 |
| TraesCS1B01G008000.1 | Wheat | nucleus | 36.55 | 34.83 |
| TraesCS1D01G002500.1 | Wheat | nucleus | 36.44 | 34.61 |
| Bra004728.1-P | Field mustard | nucleus | 28.03 | 33.92 |
| Bra000279.1-P | Field mustard | nucleus | 29.48 | 33.42 |
| OQU77194 | Sorghum | plastid | 30.16 | 32.89 |
| TraesCS1A01G005800.2 | Wheat | nucleus | 35.65 | 32.82 |
| Bra004255.1-P | Field mustard | plastid | 13.79 | 22.36 |
| Bra028677.1-P | Field mustard | nucleus, plastid | 6.95 | 22.14 |
| Bra036347.1-P | Field mustard | plastid | 13.34 | 21.88 |
| Bra025185.1-P | Field mustard | nucleus | 14.24 | 20.89 |
| Bra035509.1-P | Field mustard | cytosol, plastid | 5.38 | 20.08 |
Protein Annotations
| Gene3D:3.30.70.330 | MapMan:35.1 | EnsemblPlantsGene:Bra029297 | EnsemblPlants:Bra029297.1 | EnsemblPlants:Bra029297.1-P | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 | InterPro:IPR000504 | InterPro:IPR012677 | UniProt:M4EKI0 |
| InterPro:MEI2-like_RRM3 | InterPro:MEI2_like_RRM1 | InterPro:Mei2-like_Rrm_C | InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 | PFAM:PF04059 |
| PFscan:PS50102 | PANTHER:PTHR44127 | PANTHER:PTHR44127:SF6 | InterPro:RBD_domain_sf | InterPro:RRM_dom | SMART:SM00360 |
| SUPFAM:SSF54928 | UniParc:UPI0002545BA3 | SEG:seg | : | : | : |
Description
AT5G61960 (E=0.0) AML1 | AML1 (ARABIDOPSIS MEI2-LIKE PROTEIN 1); RNA binding / protein binding
Coordinates
chrA02:-:26030912..26034824
Molecular Weight (calculated)
98033.6 Da
IEP (calculated)
6.826
GRAVY (calculated)
-0.600
Length
892 amino acids
Sequence
(BLAST)
(BLAST)
001: MPSDVMEQGG VSTPSHFRED IRLTSERQFG FLKTDTMSEN QGGRLTKSSW TPESYQLKPQ SSLSGVHSSL SPNAKTTTSD SQWESSLFSS SLSDIFTRKL
101: RLQGSNMLSP MSGNTAVAHR EEEPSETLEE IEAQTIGNLL PDEDDLFAEV MGEVGLKSRS NGDDLDDFDL FSSVGGMELD GDVFSSVGHR NGERGSNNSV
201: GELRRGEIPS RTILAGNIGS NVEDYELKVL FEQFGDIQAF QTAFKSRGFI MVSFYDIRAA QNAARALHNK LLRGTKLDIR YSIPTENPSE KDASKGALLI
301: NNLDSSISNE ELNRMVKSYG EIKEIRRTMH DNPQIYIEFF DIRAADAALG GLNGLEVAGK QLKLAPACPE ATRYMQDAEG CLPKLAFTNT SSGNMGRHFP
401: GLISSTSIDG GSMRVSHSSV GSPVNSFIER HRSLSIPIGF QPPANVISAS KPVGVQEHGH SFDNTNMGIQ SMPNLHPHSF SEYVDNFANG GSPYKSSAAN
501: EGFMLHNVRG VDGFNGGGVG SPMSQSSRRP NPNLWSNSNT QQHNPSSGMM WPNSPSHINS IPTQRPPVTV FSRAPPIMVN MASSPVHHHI GSAPVLNSPF
601: WDRRQAYVAE SLESPGFHIG SHGSMGFPGS APSRPMEIGS HKSFSHVVGN RMDVNSPNAV LRSPQQLSHL FPGRSPMGSM PGSYDSPNER YRNLSHRRSE
701: SSSSNADKKL YELDVDRILR GDDNRTTLMV KNIPNKYTSK MLLSAIDEHC KGTYDFLYLP IDFKNKCNVG YAFINLTEPE KIVPFYKAFN GKKWEKFNSE
801: KVATLTYARI QGKVALIAHF QNSSLMNEDK RCRPILFHTD GPNAGDQEPF PMGTNIRSRP GKPRSSSTDN YNSFSIASAS ENREEPPNGT EN
101: RLQGSNMLSP MSGNTAVAHR EEEPSETLEE IEAQTIGNLL PDEDDLFAEV MGEVGLKSRS NGDDLDDFDL FSSVGGMELD GDVFSSVGHR NGERGSNNSV
201: GELRRGEIPS RTILAGNIGS NVEDYELKVL FEQFGDIQAF QTAFKSRGFI MVSFYDIRAA QNAARALHNK LLRGTKLDIR YSIPTENPSE KDASKGALLI
301: NNLDSSISNE ELNRMVKSYG EIKEIRRTMH DNPQIYIEFF DIRAADAALG GLNGLEVAGK QLKLAPACPE ATRYMQDAEG CLPKLAFTNT SSGNMGRHFP
401: GLISSTSIDG GSMRVSHSSV GSPVNSFIER HRSLSIPIGF QPPANVISAS KPVGVQEHGH SFDNTNMGIQ SMPNLHPHSF SEYVDNFANG GSPYKSSAAN
501: EGFMLHNVRG VDGFNGGGVG SPMSQSSRRP NPNLWSNSNT QQHNPSSGMM WPNSPSHINS IPTQRPPVTV FSRAPPIMVN MASSPVHHHI GSAPVLNSPF
601: WDRRQAYVAE SLESPGFHIG SHGSMGFPGS APSRPMEIGS HKSFSHVVGN RMDVNSPNAV LRSPQQLSHL FPGRSPMGSM PGSYDSPNER YRNLSHRRSE
701: SSSSNADKKL YELDVDRILR GDDNRTTLMV KNIPNKYTSK MLLSAIDEHC KGTYDFLYLP IDFKNKCNVG YAFINLTEPE KIVPFYKAFN GKKWEKFNSE
801: KVATLTYARI QGKVALIAHF QNSSLMNEDK RCRPILFHTD GPNAGDQEPF PMGTNIRSRP GKPRSSSTDN YNSFSIASAS ENREEPPNGT EN
001: MPSDIMEQRG VSTPSHFHED IHITSERQFG FMKTDMMPEN QGGRDRLSSM PKSSWTSESY QLKPQSSFSG SHPSGSPNAR NTTNGSQWES SLFSSSMSDL
101: FSRKLRLQGS DMLSTMSANT VVTHREEEPS ESLEEIEAQT IGNLLPDEDD LFAEVTGEVG RKSRANTGDE LDEFDLFSSV GGMELDGDIF SSVSHRNGER
201: GGNNSVGELN RGEIPSRTLL VGNISSNVED YELKVLFEQF GDIQALHTAC KNRGFIMVSY CDIRAAQNAA RALQNKLLRG TKLDIRYSIS KENPSQKDTS
301: KGALLVNNLD SSISNQELNR LVKSYGEVKE IRRTMHDNSQ IYIEFFDVRA AAAALGGLNG LEVAGKKLQL VPTYPEGTRY TSQCAANDTE GCLPKTSYSN
401: TSSGHIGRHF PGMISSTSSD GGSMRVIHNS IGSPVNSFIE RHRSLSIPIG FPPSANGISA SKPVGLQEHG HHFDNSNMGI QSMPNLHPHS FSEYVDNFAN
501: GSPYTSSAFS EMVSDGSKAN EGFMIHNVRG VEGFSGGGIG SPMHQSSRRP INLWSNSNTQ QQNPSSGMMW PNSPSHINSI PTQRPPVTVF SRAPPIMVNM
601: ASSPVHHHIG SAPVLNSPFW DRRQAYVAES LESSGFHIGS HGSMGIPGSS PSHPMDIGSH KTFSVGGNRM DVNSQNAVLR SPQQLSHLFP GRSPMGSMPG
701: SFDSPNERYR NLSHRRSESS SSNADKKLYE LDVDRILRGE DRRTTLMIKN IPNKYTSKML LSAIDEHCKG TYDFLYLPID FKNKCNVGYA FINLIEPEKI
801: VPFFKAFNGK KWEKFNSEKV ATLTYARIQG KTALIAHFQN SSLMNEDKRC RPILFHTDGP NAGDQEPFPM GSNIRSRPGK PRSSSIDNYN SFSISSVSEN
901: REETPNGTDP FLKEN
101: FSRKLRLQGS DMLSTMSANT VVTHREEEPS ESLEEIEAQT IGNLLPDEDD LFAEVTGEVG RKSRANTGDE LDEFDLFSSV GGMELDGDIF SSVSHRNGER
201: GGNNSVGELN RGEIPSRTLL VGNISSNVED YELKVLFEQF GDIQALHTAC KNRGFIMVSY CDIRAAQNAA RALQNKLLRG TKLDIRYSIS KENPSQKDTS
301: KGALLVNNLD SSISNQELNR LVKSYGEVKE IRRTMHDNSQ IYIEFFDVRA AAAALGGLNG LEVAGKKLQL VPTYPEGTRY TSQCAANDTE GCLPKTSYSN
401: TSSGHIGRHF PGMISSTSSD GGSMRVIHNS IGSPVNSFIE RHRSLSIPIG FPPSANGISA SKPVGLQEHG HHFDNSNMGI QSMPNLHPHS FSEYVDNFAN
501: GSPYTSSAFS EMVSDGSKAN EGFMIHNVRG VEGFSGGGIG SPMHQSSRRP INLWSNSNTQ QQNPSSGMMW PNSPSHINSI PTQRPPVTVF SRAPPIMVNM
601: ASSPVHHHIG SAPVLNSPFW DRRQAYVAES LESSGFHIGS HGSMGIPGSS PSHPMDIGSH KTFSVGGNRM DVNSQNAVLR SPQQLSHLFP GRSPMGSMPG
701: SFDSPNERYR NLSHRRSESS SSNADKKLYE LDVDRILRGE DRRTTLMIKN IPNKYTSKML LSAIDEHCKG TYDFLYLPID FKNKCNVGYA FINLIEPEKI
801: VPFFKAFNGK KWEKFNSEKV ATLTYARIQG KTALIAHFQN SSLMNEDKRC RPILFHTDGP NAGDQEPFPM GSNIRSRPGK PRSSSIDNYN SFSISSVSEN
901: REETPNGTDP FLKEN
Arabidopsis Description
ML1Protein MEI2-like 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8W4I9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.