Factsheet for AT1G29400.3

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus, plastid
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY48336	Canola	nucleus	82.88	85.77
Bra032316.1-P	Field mustard	nucleus	84.5	85.35
CDX99820	Canola	nucleus	84.5	85.35
CDY15631	Canola	nucleus	75.0	81.52
Bra030135.1-P	Field mustard	nucleus	74.75	81.25
CDX94663	Canola	nucleus	74.75	81.14
AT2G42890.1	Thale cress	nucleus	42.12	39.98
AT5G07290.1	Thale cress	nucleus	38.62	34.07
AT5G61960.1	Thale cress	nucleus	38.0	33.22
AT3G26120.1	Thale cress	nucleus	18.62	24.23
AT1G67770.1	Thale cress	plastid	15.88	24.1
AT1G37140.1	Thale cress	plastid	5.88	20.17
AT5G07930.3	Thale cress	nucleus	6.75	18.37

Protein Annotations

Gene3D:3.30.70.330	MapMan:35.1	EntrezGene:839816	UniProt:A0A178W1W1	ProteinID:AAG51742.1	ProteinID:AEE31082.1
ProteinID:AEE31083.1	EMBL:AK230306	Symbol:AML5	ProteinID:ANM58035.1	ArrayExpress:AT1G29400	EnsemblPlantsGene:AT1G29400
RefSeq:AT1G29400	TAIR:AT1G29400	RefSeq:AT1G29400-TAIR-G	EnsemblPlants:AT1G29400.3	EMBL:AY062613	EMBL:AY070368
EMBL:AY091327	Unigene:At.27439	GO:GO:0000003	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0003729	GO:GO:0005488	GO:GO:0007049	GO:GO:0008150	GO:GO:0009987	GO:GO:0016043
GO:GO:0040007	GO:GO:0045836	GO:GO:0045927	GO:GO:0051321	InterPro:IPR000504	InterPro:IPR012677
InterPro:MEI2-like_RRM3	InterPro:MEI2_like_RRM1	InterPro:Mei2-like_Rrm_C	RefSeq:NP_001320501.1	RefSeq:NP_174233.2	RefSeq:NP_849727.1
InterPro:Nucleotide-bd_a/b_plait_sf	ProteinID:OAP12116.1	PFAM:PF00076	PFAM:PF04059	PFscan:PS50102	PANTHER:PTHR44127
PANTHER:PTHR44127:SF5	UniProt:Q8VWF5	InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360	SUPFAM:SSF54928
UniParc:UPI00000A451C	SEG:seg	:	:	:	:

Description

ML5Protein MEI2-like 5 [Source:UniProtKB/Swiss-Prot;Acc:Q8VWF5]

Coordinates

chr1:-:10290040..10294630

Molecular Weight (calculated)

88217.5 Da

IEP (calculated)

6.146

GRAVY (calculated)

-0.561

Length

800 amino acids

Sequence
(BLAST)

001: MDIPHEAEAG AWGILPGFGR HHHPSSDATL FSSSLPVFPR GKLQLSDNRD GFSLIDDTAV SRTNKFNESA DDFESHSIGN LLPDEEDLLT GMMDDLDLGE
101: LPDADDYDLF GSGGGMELDA DFRDNLSMSG PPRLSLSSLG GNAIPQFNIP NGAGTVAGEH PYGEHPSRTL FVRNINSNVE DSELTALFEQ YGDIRTLYTT
201: CKHRGFVMIS YYDIRSARMA MRSLQNKPLR RRKLDIHFSI PKDNPSEKDM NQGTLVVFNL DPSISNDDLH GIFGAHGEIK EIRETPHKRH HKFVEFYDVR
301: GAEAALKALN RCEIAGKRIK VEPSRPGGAR RSLMLQLNQD LENDDLHYLP MIGSPMANSP PMQGNWPLNS PVEGSPLQSV LSRSPVFGLS PTRNGHLSGL
401: ASALNSQGPS SKLAPIGRGQ IGSNGFQQSS HLFQEPKMDN KYTGNLSPSG PLISNGGGIE TLSGSEFLWG SPNARSEPSS SSVWSTSSTG NPLFSTRVDR
501: SVPFPHQHQN QSRSHHHFHV GSAPSGVPLE KHFGFVPESS KDALFMNTVG LQGMSGMGLN GGSFSSKMAN NGIINSGSMA ENGFSSYRMM SSPRFSPMFL
601: SSGLNPGRFA SGFDSLYENG RPRRVENNSN QVESRKQFQL DLEKILNGED SRTTLMIKNI PNKYTSKMLL AAIDEKNQGT YNFLYLPIDF KNKCNVGYAF
701: INMLNPELII PFYEAFNGKK WEKFNSEKVA SLAYARIQGK SALIAHFQNS SLMNEDMRCR PIIFDTPNNP ESVEQVVDEE SKNMDLLDSQ LSDDDGRERS

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.