Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- nucleus 2
- plastid 5
- peroxisome 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY01848 | Canola | plastid | 62.24 | 65.34 |
| CDY56219 | Canola | plastid | 62.24 | 62.36 |
| Bra004255.1-P | Field mustard | plastid | 63.0 | 60.36 |
| KRH31364 | Soybean | cytosol, nucleus | 17.08 | 52.02 |
| KRG97510 | Soybean | nucleus | 41.75 | 40.82 |
| AT3G26120.1 | Thale cress | nucleus | 45.16 | 38.7 |
| VIT_14s0219g00270.t01 | Wine grape | plastid | 38.71 | 36.49 |
| VIT_01s0137g00320.t01 | Wine grape | nucleus | 45.54 | 36.47 |
| GSMUA_Achr7P02820_001 | Banana | cytosol, nucleus, plastid | 34.91 | 36.44 |
| Solyc05g013930.1.1 | Tomato | nucleus | 43.83 | 36.44 |
| KRH31365 | Soybean | nucleus | 21.82 | 35.38 |
| PGSC0003DMT400027957 | Potato | nucleus | 32.26 | 35.12 |
| AT1G37140.1 | Thale cress | plastid | 15.37 | 34.76 |
| GSMUA_Achr8P01280_001 | Banana | cytoskeleton, cytosol, nucleus | 36.62 | 33.62 |
| GSMUA_Achr8P32080_001 | Banana | nucleus | 39.85 | 30.39 |
| Os01t0907900-01 | Rice | nucleus | 38.52 | 29.72 |
| TraesCS3B01G447800.1 | Wheat | nucleus | 37.76 | 29.44 |
| TraesCS3A01G413400.1 | Wheat | nucleus | 37.76 | 29.26 |
| Zm00001d042445_P001 | Maize | nucleus | 36.81 | 29.22 |
| HORVU3Hr1G091930.1 | Barley | nucleus | 37.38 | 29.1 |
| TraesCS3D01G407900.1 | Wheat | nucleus | 37.57 | 28.99 |
| EES01930 | Sorghum | nucleus | 36.62 | 28.98 |
| AT5G07930.3 | Thale cress | nucleus | 13.28 | 23.81 |
| AT1G29400.3 | Thale cress | nucleus | 24.1 | 15.88 |
| AT2G42890.1 | Thale cress | nucleus | 22.39 | 14.0 |
| AT5G61960.1 | Thale cress | nucleus | 22.58 | 13.01 |
| AT5G07290.1 | Thale cress | nucleus | 22.2 | 12.9 |
Protein Annotations
| Gene3D:3.30.70.330 | MapMan:35.1 | EntrezGene:843102 | ProteinID:AAG28908.1 | ProteinID:AEE34692.1 | ArrayExpress:AT1G67770 |
| EnsemblPlantsGene:AT1G67770 | RefSeq:AT1G67770 | TAIR:AT1G67770 | RefSeq:AT1G67770-TAIR-G | EnsemblPlants:AT1G67770.1 | TAIR:AT1G67770.1 |
| EMBL:DQ446408 | InterPro:EAR1_like_RRM3 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 |
| InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Mei2-like | InterPro:Mei2-like_Rrm_C | RefSeq:NP_176943.1 | InterPro:Nucleotide-bd_a/b_plait_sf |
| PFAM:PF00076 | PFAM:PF04059 | PO:PO:0000037 | PO:PO:0000229 | PO:PO:0001078 | PO:PO:0004507 |
| PO:PO:0006081 | PO:PO:0006362 | PO:PO:0007611 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009046 |
| PO:PO:0020148 | PFscan:PS50102 | PANTHER:PTHR45087 | UniProt:Q9FXE0 | InterPro:RBD_domain_sf | InterPro:RRM_dom |
| SMART:SM00360 | SUPFAM:SSF54928 | Symbol:TEL2 | UniParc:UPI0000048419 | SEG:seg | : |
Description
TEL2F12A21.10 [Source:UniProtKB/TrEMBL;Acc:Q9FXE0]
Coordinates
chr1:+:25407864..25410165
Molecular Weight (calculated)
60377.7 Da
IEP (calculated)
9.717
GRAVY (calculated)
-0.512
Length
527 amino acids
Sequence
(BLAST)
(BLAST)
001: MSVTGPFSHP TNLNPTAPAF FPAINQHQNQ NPSLIPTRFF LPHPPPPPPP PPPPLYFSYF SLPPPPPPPH LPPTSVTPTR AVMLLQVPAT VTETSLRRDM
101: ELFGEVRGVQ MERAHEGIVI FHFYNLINSQ RAFNEIRYRH MQQQEQQQHF HFTTARGLVS GHSLWAHFVF PQLNAVPEGN NQGSLVIMNL EPTVSSSTLR
201: HIFQVYGEVK QVRETPCKRE QRFVEFFDVR DAAKALRVMN GKVISGKPMV IQFSRPGGLT KKLFFASHFH KNFIFNNEHH YYPPPPPPSR MVKSDILMYK
301: QQQKKKKKKY VKKNLGDPYF MINENAITGG EFRDGRTTVM IKNIPNKYTQ KLLLKMLDTH CKDCNQSVIK EGNKTPMSSY DFVYLPIDFS NKSNVGYGFV
401: NMTSPEAVWR LYKSFHNQHW RDFTTTRKIC EVTYARIQGL ESLREHFKNV RLAGVEIDEY MPVVFSPPRD GRLSPEPVAI VDPWDKPVDD EDRCCKSRDG
501: FVVSDKKMVG SDGCGFCLSE RIENGGV
101: ELFGEVRGVQ MERAHEGIVI FHFYNLINSQ RAFNEIRYRH MQQQEQQQHF HFTTARGLVS GHSLWAHFVF PQLNAVPEGN NQGSLVIMNL EPTVSSSTLR
201: HIFQVYGEVK QVRETPCKRE QRFVEFFDVR DAAKALRVMN GKVISGKPMV IQFSRPGGLT KKLFFASHFH KNFIFNNEHH YYPPPPPPSR MVKSDILMYK
301: QQQKKKKKKY VKKNLGDPYF MINENAITGG EFRDGRTTVM IKNIPNKYTQ KLLLKMLDTH CKDCNQSVIK EGNKTPMSSY DFVYLPIDFS NKSNVGYGFV
401: NMTSPEAVWR LYKSFHNQHW RDFTTTRKIC EVTYARIQGL ESLREHFKNV RLAGVEIDEY MPVVFSPPRD GRLSPEPVAI VDPWDKPVDD EDRCCKSRDG
501: FVVSDKKMVG SDGCGFCLSE RIENGGV
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.