Factsheet for VIT_01s0137g00320.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 1
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus, plastid
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY01848	Canola	plastid	37.23	48.8
Solyc05g013930.1.1	Tomato	nucleus	46.81	48.58
VIT_14s0219g00270.t01	Wine grape	plastid	39.82	46.87
CDY56219	Canola	plastid	37.23	46.58
GSMUA_Achr7P02820_001	Banana	cytosol, nucleus, plastid	35.71	46.53
PGSC0003DMT400027957	Potato	nucleus	34.04	46.28
Bra036347.1-P	Field mustard	plastid	37.99	45.96
AT1G67770.1	Thale cress	plastid	36.47	45.54
Bra004255.1-P	Field mustard	plastid	37.84	45.27
CDX83589	Canola	nucleus	39.82	45.09
AT3G26120.1	Thale cress	nucleus	41.49	44.39
CDX99727	Canola	nucleus	40.43	44.11
CDY13612	Canola	nucleus	40.58	43.91
CDY40990	Canola	nucleus	40.73	43.79
Bra025185.1-P	Field mustard	nucleus	40.43	43.75
VIT_03s0038g00390.t01	Wine grape	cytosol	8.51	40.0
VIT_00s0239g00110.t01	Wine grape	plastid	6.69	40.0
GSMUA_Achr8P01280_001	Banana	cytoskeleton, cytosol, nucleus	34.35	39.37
GSMUA_Achr8P32080_001	Banana	nucleus	41.34	39.36
Zm00001d042445_P001	Maize	nucleus	37.54	37.2
EES01930	Sorghum	nucleus	37.39	36.94
HORVU3Hr1G091930.1	Barley	nucleus	37.54	36.48
Os01t0907900-01	Rice	nucleus	37.84	36.46
TraesCS3B01G447800.1	Wheat	nucleus	37.23	36.24
TraesCS3D01G407900.1	Wheat	nucleus	37.54	36.16
TraesCS3A01G413400.1	Wheat	nucleus	37.08	35.88
VIT_18s0001g03840.t01	Wine grape	mitochondrion	11.4	24.75
VIT_12s0142g00100.t01	Wine grape	nucleus	23.4	18.16
VIT_10s0003g02670.t01	Wine grape	nucleus	23.4	17.42
VIT_17s0000g00240.t01	Wine grape	nucleus	24.62	16.23
VIT_01s0150g00090.t01	Wine grape	nucleus	23.71	15.76

Protein Annotations

EntrezGene:100242186	wikigene:100242186	Gene3D:3.30.70.330	MapMan:35.1	ProteinID:CCB44011	ProteinID:CCB44011.1
InterPro:EAR1_like_RRM3	UniProt:F6GVP8	EMBL:FN594954	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0005488	InterPro:IPR000504	InterPro:IPR012677	EntrezGene:LOC100242186	wikigene:LOC100242186	InterPro:Mei2-like
InterPro:Mei2-like_Rrm_C	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFAM:PF04059	PFscan:PS50102	PANTHER:PTHR45087
InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360	SUPFAM:SSF54928	UniParc:UPI0001982B3B	ArrayExpress:VIT_01s0137g00320
EnsemblPlantsGene:VIT_01s0137g00320	EnsemblPlants:VIT_01s0137g00320.t01	unigene:Vvi.19619	RefSeq:XP_002282117	RefSeq:XP_002282117.1	SEG:seg

Description

No Description!

Coordinates

chr1:+:6863499..6866602

Molecular Weight (calculated)

74172.4 Da

IEP (calculated)

8.214

GRAVY (calculated)

-0.613

Length

658 amino acids

Sequence
(BLAST)

001: MGETGTSRFL GNLDPSAQEF RPRNPYIQNQ MSLSVPTQIY YPYTHPHPQF VASSAYVRPI AGKPPLSPLM SPLSATPTRA LLLSSVPTDV SEVTVRRELE
101: AFGEVRSVQI ERVCDGIVAV SFYDLRHAQA CLTEVREQHM QQQSRLKKHY DSLLTRKLAS QVEHLLVPLP PPARGLIAGR AVWAQFMIPV STCMLDDYNQ
201: GTLVIFNLDS EVSTSSLRDI FETFGSIKEL RETPLKRHQR FVEFFDIRDA ARALREMNGK KIQGKRVVIE FSRPGGHGWR FFNAISTTAL SSTYSTTNST
301: VISPSRLAYH TVTSRCPPAL PCKLPEKSSH FNVPPHSYLS QTHHSTKKSN VGINKRSSNA GNIKASMTSL RLTGSVVNGI EDSKGVHRWN PKKSPNGSST
401: TEQQQQQAQR NRPWKGRQKN IDSCFLINED AKTESHYRDS RTTVMIKNIP NKYSQKLLMN MLDNHCIDCN KQVPDGGDQP LSSYDFIYLP IDFNNKCNVG
501: YGFVNMTSPQ ATWRLYKAFH LQSWKVFNST KICEVTYARI QGLEALKEHF KNSKFLCDTK TYLPVVFSPP RDGRQLTEPQ PIVGNNKLII GIITNDTKAS
601: DDNDDGDEWE MMMDGPHRLN NGGHVRDYDD DVEDYNDHNQ SPNDDDSGDD DDSTSVSA

Best Arabidopsis Sequence Match ( AT3G26120.1 )
(BLAST)

001: MEDSRLFPFV GNLDPRAQEF IPFNPISSGF HFPYTPPPPQ LPPPLPPSSY GLSPTEPRVF TFFNIPPHPM MFSPPPPQPP PPPPRPCFNG VSAAQRLPLP
101: SNTPTRSLSL ISVPRDVTES TVRRDLEVYG DVRGVQMERI SEGIVTVHFY DIRDAKRAVR EVCGRHMQQQ ARGGSVWSSP STSSARGFVS GRPVWAQFVV
201: PATSAVPGGC NQGTLVIFNL DPEVSSITLR QIFQVYGPIK ELRETPYKKH QRFVEFYDVR DAARAFDRMN GKEIGGKQVV IEFSRPGGIK NRFRSSRQPQ
301: LPFQPLREPP ILIPPLRRPV SFIKDKNKNV SPKNGVIAVD ASMRSLCIID ADDNKTRGTR GTESECAETK SKNVAKWGKK RQMKNMELSQ FLISEETMED
401: PSCRDPRTTL MIKNIPNKYS QKLLLDMLDK HCIHINEAIT EEHNKHESHH QPYSSYDFVY LPMDFNNKCN VGYGFVNMTS PEAAWRFYKA FHGQRWEVFN
501: SHKICQITYA RVQGLEDLKE HFKSSKFPCE AELYLPVVFS PPRDGKQLTE PVSINITING CTRLNHNHFE QTVGQDHFLS GSCCDSDHDN SHEDGFSGSS
601: VDCGRSITVE GETSF

Arabidopsis Description

TEL1Terminal EAR1-like 1 [Source:UniProtKB/TrEMBL;Acc:F4JBE2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.