Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX99727 | Canola | nucleus | 80.49 | 82.09 |
| Bra036347.1-P | Field mustard | plastid | 72.52 | 81.99 |
| CDY40990 | Canola | nucleus | 81.3 | 81.7 |
| CDX83589 | Canola | nucleus | 75.61 | 80.03 |
| CDY13612 | Canola | nucleus | 78.21 | 79.11 |
| Bra025185.1-P | Field mustard | nucleus | 78.21 | 79.11 |
| KRH31364 | Soybean | cytosol, nucleus | 16.59 | 58.96 |
| AT1G67770.1 | Thale cress | plastid | 38.7 | 45.16 |
| Solyc05g013930.1.1 | Tomato | nucleus | 45.85 | 44.48 |
| KRG97510 | Soybean | nucleus | 38.7 | 44.16 |
| PGSC0003DMT400027957 | Potato | nucleus | 33.33 | 42.36 |
| GSMUA_Achr7P02820_001 | Banana | cytosol, nucleus, plastid | 34.63 | 42.18 |
| VIT_01s0137g00320.t01 | Wine grape | nucleus | 44.39 | 41.49 |
| VIT_14s0219g00270.t01 | Wine grape | plastid | 37.07 | 40.79 |
| GSMUA_Achr8P01280_001 | Banana | cytoskeleton, cytosol, nucleus | 35.45 | 37.98 |
| KRH31365 | Soybean | nucleus | 20.0 | 37.85 |
| AT1G37140.1 | Thale cress | plastid | 13.5 | 35.62 |
| GSMUA_Achr8P32080_001 | Banana | nucleus | 38.54 | 34.3 |
| EES01930 | Sorghum | nucleus | 36.91 | 34.08 |
| Zm00001d042445_P001 | Maize | nucleus | 36.75 | 34.04 |
| Os01t0907900-01 | Rice | nucleus | 36.75 | 33.09 |
| TraesCS3B01G447800.1 | Wheat | nucleus | 35.61 | 32.4 |
| HORVU3Hr1G091930.1 | Barley | nucleus | 35.61 | 32.35 |
| TraesCS3A01G413400.1 | Wheat | nucleus | 35.45 | 32.06 |
| TraesCS3D01G407900.1 | Wheat | nucleus | 35.45 | 31.92 |
| AT5G07930.3 | Thale cress | nucleus | 12.2 | 25.51 |
| AT1G29400.3 | Thale cress | nucleus | 24.23 | 18.62 |
| AT2G42890.1 | Thale cress | nucleus | 22.28 | 16.25 |
| AT5G07290.1 | Thale cress | nucleus | 20.49 | 13.89 |
| AT5G61960.1 | Thale cress | nucleus | 20.49 | 13.77 |
Protein Annotations
| Gene3D:3.30.70.330 | MapMan:35.1 | EntrezGene:822211 | ProteinID:AEE77122.1 | ArrayExpress:AT3G26120 | EnsemblPlantsGene:AT3G26120 |
| RefSeq:AT3G26120 | TAIR:AT3G26120 | RefSeq:AT3G26120-TAIR-G | EnsemblPlants:AT3G26120.1 | TAIR:AT3G26120.1 | Unigene:At.53499 |
| InterPro:EAR1_like_RRM3 | UniProt:F4JBE2 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 |
| InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Mei2-like | InterPro:Mei2-like_Rrm_C | RefSeq:NP_189242.1 | InterPro:Nucleotide-bd_a/b_plait_sf |
| PFAM:PF00076 | PFAM:PF04059 | PO:PO:0000015 | PO:PO:0000229 | PO:PO:0001078 | PO:PO:0004507 |
| PO:PO:0006081 | PO:PO:0006362 | PO:PO:0020148 | PFscan:PS50102 | PANTHER:PTHR45087 | InterPro:RBD_domain_sf |
| InterPro:RRM_dom | SMART:SM00360 | SUPFAM:SSF54928 | Symbol:TEL1 | UniParc:UPI0000163552 | SEG:seg |
Description
TEL1Terminal EAR1-like 1 [Source:UniProtKB/TrEMBL;Acc:F4JBE2]
Coordinates
chr3:+:9546259..9549453
Molecular Weight (calculated)
69483.6 Da
IEP (calculated)
8.323
GRAVY (calculated)
-0.563
Length
615 amino acids
Sequence
(BLAST)
(BLAST)
001: MEDSRLFPFV GNLDPRAQEF IPFNPISSGF HFPYTPPPPQ LPPPLPPSSY GLSPTEPRVF TFFNIPPHPM MFSPPPPQPP PPPPRPCFNG VSAAQRLPLP
101: SNTPTRSLSL ISVPRDVTES TVRRDLEVYG DVRGVQMERI SEGIVTVHFY DIRDAKRAVR EVCGRHMQQQ ARGGSVWSSP STSSARGFVS GRPVWAQFVV
201: PATSAVPGGC NQGTLVIFNL DPEVSSITLR QIFQVYGPIK ELRETPYKKH QRFVEFYDVR DAARAFDRMN GKEIGGKQVV IEFSRPGGIK NRFRSSRQPQ
301: LPFQPLREPP ILIPPLRRPV SFIKDKNKNV SPKNGVIAVD ASMRSLCIID ADDNKTRGTR GTESECAETK SKNVAKWGKK RQMKNMELSQ FLISEETMED
401: PSCRDPRTTL MIKNIPNKYS QKLLLDMLDK HCIHINEAIT EEHNKHESHH QPYSSYDFVY LPMDFNNKCN VGYGFVNMTS PEAAWRFYKA FHGQRWEVFN
501: SHKICQITYA RVQGLEDLKE HFKSSKFPCE AELYLPVVFS PPRDGKQLTE PVSINITING CTRLNHNHFE QTVGQDHFLS GSCCDSDHDN SHEDGFSGSS
601: VDCGRSITVE GETSF
101: SNTPTRSLSL ISVPRDVTES TVRRDLEVYG DVRGVQMERI SEGIVTVHFY DIRDAKRAVR EVCGRHMQQQ ARGGSVWSSP STSSARGFVS GRPVWAQFVV
201: PATSAVPGGC NQGTLVIFNL DPEVSSITLR QIFQVYGPIK ELRETPYKKH QRFVEFYDVR DAARAFDRMN GKEIGGKQVV IEFSRPGGIK NRFRSSRQPQ
301: LPFQPLREPP ILIPPLRRPV SFIKDKNKNV SPKNGVIAVD ASMRSLCIID ADDNKTRGTR GTESECAETK SKNVAKWGKK RQMKNMELSQ FLISEETMED
401: PSCRDPRTTL MIKNIPNKYS QKLLLDMLDK HCIHINEAIT EEHNKHESHH QPYSSYDFVY LPMDFNNKCN VGYGFVNMTS PEAAWRFYKA FHGQRWEVFN
501: SHKICQITYA RVQGLEDLKE HFKSSKFPCE AELYLPVVFS PPRDGKQLTE PVSINITING CTRLNHNHFE QTVGQDHFLS GSCCDSDHDN SHEDGFSGSS
601: VDCGRSITVE GETSF
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.