Factsheet for GSMUA_Achr6P13670_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
plastid 1
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr10P...	Banana	nucleus	57.28	41.99
KRH37781	Soybean	nucleus	52.1	37.35
KRH12823	Soybean	nucleus	51.78	37.12
VIT_10s0003g02670.t01	Wine grape	nucleus	52.75	36.88
Os02t0319100-01	Rice	nucleus	46.93	35.76
EER89028	Sorghum	nucleus	48.54	35.5
PGSC0003DMT400007982	Potato	nucleus	48.87	35.49
Zm00001d045611_P001	Maize	nucleus	48.38	35.3
TraesCS7D01G003000.1	Wheat	plastid	49.19	34.94
TraesCS7A01G003100.1	Wheat	plastid	49.03	34.91
TraesCS4A01G495500.1	Wheat	plastid	49.35	34.82
Zm00001d035869_P017	Maize	golgi	47.9	34.7
Os02t0719800-02	Rice	plasma membrane	47.41	34.55
Solyc02g071270.1.1	Tomato	extracellular	47.25	34.47
HORVU7Hr1G000370.12	Barley	nucleus, plastid	49.19	34.23
GSMUA_Achr4P31220_001	Banana	plastid	49.35	33.89
GSMUA_Achr10P...	Banana	nucleus	45.15	29.18
GSMUA_Achr2P21440_001	Banana	mitochondrion, nucleus	43.04	28.73
GSMUA_Achr10P...	Banana	nucleus	46.44	28.39
GSMUA_Achr6P11050_001	Banana	nucleus	44.01	28.19
GSMUA_Achr11P...	Banana	cytosol	7.12	27.5
GSMUA_Achr6P13690_001	Banana	golgi, plasma membrane	58.9	26.47
GSMUA_Achr3P03100_001	Banana	nucleus	54.85	25.53
GSMUA_Achr2P20130_001	Banana	nucleus	49.19	24.76
GSMUA_Achr7P02820_001	Banana	cytosol, nucleus, plastid	18.93	23.17
GSMUA_Achr5P05840_001	Banana	cytosol, mitochondrion, nucleus, plasma membrane	10.52	21.96
GSMUA_Achr8P01280_001	Banana	cytoskeleton, cytosol, nucleus	19.09	20.56
GSMUA_Achr8P32080_001	Banana	nucleus	19.09	17.08

Protein Annotations

Gene3D:3.30.70.330	MapMan:35.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488
EnsemblPlantsGene:GSMUA_Achr6G13670_001	EnsemblPlants:GSMUA_Achr6P13670_001	EnsemblPlants:GSMUA_Achr6T13670_001	InterPro:IPR000504	InterPro:IPR012677	UniProt:M0T6R5
InterPro:MEI2-like_RRM3	InterPro:MEI2_like_RRM1	InterPro:Mei2-like_Rrm_C	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFAM:PF04059
PFscan:PS50102	PANTHER:PTHR44127	PANTHER:PTHR44127:SF5	InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360
SUPFAM:SSF54928	UniParc:UPI000295E776	SEG:seg	:	:	:

Description

AML1, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr6G13670_001]

Coordinates

chr6:-:9101529..9104254

Molecular Weight (calculated)

68083.7 Da

IEP (calculated)

5.813

GRAVY (calculated)

-0.480

Length

618 amino acids

Sequence
(BLAST)

001: MDDVDPQDVG IMLPDDEAAL LSGALDCLDL SESPGQVLVA LEDCDLFCDG GKMELDSDPK ESITVGSYLG NVNHQYTLAG GVGTISVAHP HCEHPSRTLF
101: VRNVDNNVED SELRSLFEKF GEIRSLYTEC KPKGFVMISY YDIRAAQSAR RALQNMPLRR RNLDIHYSIP KDNPSNQETN QGILVVFNLR PSLSTEDIAQ
201: MFGAYGEIKE IWETPHKRHH KFIEFYDVRA AEAALRSLHN TEIAGMRLKI EPSSHGGTRR YSMQQLSRES EQDESVVPGD LSIANSSPGS WLQLGIPNDI
301: PYCQQDTWRN DDITLESFAK SAANPTGLSG YRDKISSSSS SSPLQGGGSQ RSHSFPYLGC AQGEMTSISG NLTSFGPPTP NTSGVRNQSG SRYPCGTSTS
401: YMGNVQSSSW QPGATGGSFM ADGHGRERSS RYSNQHGSFM GSLANMKNQG ITVSGNVPSH GFGAAPFYNA PYSGRANNDQ YQLDLDKITK GEDTRTTIMI
501: KNIPNNYTSK MILAEIDATH KGTYDFFYLP IDFMKMCNVG YAFINMLSPA HILTFYKAFS GKKWEKFNSE KIISLAYARI QGRAALVAHF QDSNLMAEAK
601: IWHPIFLDPE GAEAGDQV

Best Arabidopsis Sequence Match ( AT1G29400.1 )
(BLAST)

001: MDIPHEAEAG AWGILPGFGR HHHPSSDATL FSSSLPVFPR GKLQLSDNRD GFSLIDDTAV SRTNKFNESA DDFESHSIGN LLPDEEDLLT GMMDDLDLGE
101: LPDADDYDLF GSGGGMELDA DFRDNLSMSG PPRLSLSSLG GNAIPQFNIP NGAGTVAGEH PYGEHPSRTL FVRNINSNVE DSELTALFEQ YGDIRTLYTT
201: CKHRGFVMIS YYDIRSARMA MRSLQNKPLR RRKLDIHFSI PKDNPSEKDM NQGTLVVFNL DPSISNDDLH GIFGAHGEIK EIRETPHKRH HKFVEFYDVR
301: GAEAALKALN RCEIAGKRIK VEPSRPGGAR RSLMLQLNQD LENDDLHYLP MIGSPMANSP PMQGNWPLNS PVEGSPLQSV LSRSPVFGLS PTRNGHLSGL
401: ASALNSQGPS SKLAPIGRGQ IGSNGFQQSS HLFQEPKMDN KYTGNLSPSG PLISNGGGIE TLSGSEFLWG SPNARSEPSS SSVWSTSSTG NPLFSTRVDR
501: SVPFPHQHQN QSRSHHHFHV GSAPSGVPLE KHFGFVPESS KDALFMNTVG LQGMSGMGLN GGSFSSKMAN NGIINSGSMA ENGFSSYRMM SSPRFSPMFL
601: SSGLNPGRFA SGFDSLYENG RPRRVENNSN QVESRKQFQL DLEKILNGED SRTTLMIKNI PNKYTSKMLL AAIDEKNQGT YNFLYLPIDF KNKCNVGYAF
701: INMLNPELII PFYEAFNGKK WEKFNSEKVA SLAYARIQGK SALIAHFQNS SLMNEDMRCR PIIFDTPNNP ESVEQVVDEE SKNMDLLDSQ LSDDDGRERS

Arabidopsis Description

ML5Protein MEI2-like 5 [Source:UniProtKB/Swiss-Prot;Acc:Q8VWF5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.