Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr10P... | Banana | nucleus | 43.65 | 63.58 |
| VIT_10s0003g02670.t01 | Wine grape | nucleus | 38.03 | 52.83 |
| EER89028 | Sorghum | nucleus | 35.26 | 51.24 |
| KRH12823 | Soybean | nucleus | 35.75 | 50.93 |
| KRH37781 | Soybean | nucleus | 35.59 | 50.7 |
| Zm00001d045611_P001 | Maize | nucleus | 34.85 | 50.53 |
| Zm00001d035869_P017 | Maize | golgi | 34.93 | 50.29 |
| Os02t0719800-02 | Rice | plasma membrane | 34.61 | 50.12 |
| TraesCS7D01G003000.1 | Wheat | plastid | 35.5 | 50.11 |
| TraesCS7A01G003100.1 | Wheat | plastid | 35.34 | 50.0 |
| TraesCS4A01G495500.1 | Wheat | plastid | 35.42 | 49.66 |
| GSMUA_Achr6P13670_001 | Banana | nucleus | 24.76 | 49.19 |
| PGSC0003DMT400007982 | Potato | nucleus | 33.96 | 49.0 |
| HORVU7Hr1G000370.12 | Barley | nucleus, plastid | 35.42 | 48.99 |
| GSMUA_Achr4P31220_001 | Banana | plastid | 35.26 | 48.11 |
| Os02t0319100-01 | Rice | nucleus | 30.78 | 46.61 |
| GSMUA_Achr3P03100_001 | Banana | nucleus | 50.0 | 46.23 |
| Solyc02g071270.1.1 | Tomato | extracellular | 31.68 | 45.93 |
| GSMUA_Achr6P13690_001 | Banana | golgi, plasma membrane | 42.92 | 38.33 |
| GSMUA_Achr10P... | Banana | nucleus | 29.48 | 37.87 |
| GSMUA_Achr2P21440_001 | Banana | mitochondrion, nucleus | 27.61 | 36.61 |
| GSMUA_Achr10P... | Banana | nucleus | 29.15 | 35.41 |
| GSMUA_Achr6P11050_001 | Banana | nucleus | 27.52 | 35.03 |
| GSMUA_Achr11P... | Banana | cytosol | 4.15 | 31.88 |
| GSMUA_Achr5P05840_001 | Banana | cytosol, mitochondrion, nucleus, plasma membrane | 6.19 | 25.68 |
| GSMUA_Achr7P02820_001 | Banana | cytosol, nucleus, plastid | 10.42 | 25.35 |
| GSMUA_Achr8P01280_001 | Banana | cytoskeleton, cytosol, nucleus | 10.91 | 23.34 |
| GSMUA_Achr8P32080_001 | Banana | nucleus | 11.4 | 20.26 |
Protein Annotations
| MapMan:15.5.22 | Gene3D:2.20.25.80 | Gene3D:3.30.70.330 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0003700 | GO:GO:0003723 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0043565 | EnsemblPlantsGene:GSMUA_Achr2G20130_001 | EnsemblPlants:GSMUA_Achr2P20130_001 |
| EnsemblPlants:GSMUA_Achr2T20130_001 | InterPro:IPR000504 | InterPro:IPR003657 | InterPro:IPR012677 | InterPro:IPR036576 | UniProt:M0S9K4 |
| InterPro:MEI2-like_RRM3 | InterPro:MEI2_like_RRM1 | InterPro:Mei2-like_Rrm_C | InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 | PFAM:PF03106 |
| PFAM:PF04059 | PFscan:PS50102 | PFscan:PS50811 | PANTHER:PTHR44127 | PANTHER:PTHR44127:SF5 | InterPro:RBD_domain_sf |
| InterPro:RRM_dom | SMART:SM00360 | SMART:SM00774 | SUPFAM:SSF118290 | SUPFAM:SSF54928 | UniParc:UPI000296F39A |
| InterPro:WRKY_dom | InterPro:WRKY_dom_sf | SEG:seg | : | : | : |
Description
Putative WRKY transcription factor 6 [Source:GMGC_GENE;Acc:GSMUA_Achr2G20130_001]
Coordinates
chr2:+:20028627..20043167
Molecular Weight (calculated)
134389.0 Da
IEP (calculated)
6.784
GRAVY (calculated)
-0.509
Length
1228 amino acids
Sequence
(BLAST)
(BLAST)
0001: MDLTLRNSVP IRSLNTDSVN TLEKVDNAPE IPSGSDVLYG SNDVGLFSSS LPVLRHEKLN FSDTLGGVHS TVDASSKLKK LSKDVEGKVR VDDFKLQGMG
0101: LLLPDDEEAL LSGIMDDFDL SGLPGKVDEL EDYDLFGNLG GMELDSDPTE SITVGMAKAS MSDGFLGNGI GQYSLPNSVG AVSGEHPYGE HPSRTLFVRN
0201: INSNVEDSEL QLLFEQYGEI RSLYTACKHR GFVMISYYDI RSARTAMRAL QNKPLRRRKL DIHFSIPKDN PSDKDMNQGT LVIFNLDPSV SNDDLRQIFG
0301: AYGEVKEIRE TPHKQHHKFI EFFDVRAAEA ALRSLNKSDI AGKRIKLEPS RPGGARRNLM QHLTHELEQD ETRVYLHHGG SPINNSPPGP WAHFSSPNDN
0401: IPLQVFSHHG SFLRSSHNQN PHHVGSAPSV VPFQRQYGYF PESAEPSFMN QFALGNIGFN RKGGTGLMNM TPHPTLNQGI ISGSISIGID GLVDWHRSRR
0501: VDNHGSQADK QQYQLDLDKI IKGEDTRTTI MIKNIPNKYT SKMLLAAIDE THSGTYDFLY LPIDFKNKCN VGYAFINMSS PSHVVSFYKA FNGKKWEKFN
0601: SEKVASLAYA RIQGRSALVA HFQNSSLMNE DKRCRPILFD PEGADTGNEE LFPSSSLHIQ QEDGAVSVGV SPESPQGSSP SGKSEKSTLP GTVHFMTQSY
0701: MDNSGGIGVL TLDTSAPLFL ASSLSYGGGG ILKRKQPMDS GGHHGGAGTI EFPFSLNPRR DAETANEALT SKRVVADEVD FFSDEKKKQK KKDTIAASPV
0801: ETDLDLKVPS LGIKKEDLTI QVGDYSTFER LHVHLRSMQA ELARMNEENQ KLRGMLSQVN SSYSALQMQL ATLMQQRNRT PQAHEEKIDA ENGDQGGARV
0901: LRQFLDLGPD ADVDEHSNSS TASLERSSST PENVEVGSMG YGLHKNEGNP REALELTPTA TAEQESTMRR TRVSVRARSE APTITDGCQW RKYGQKIAKG
1001: NPCPRAYYRC TMATGCPVRK QVQRCADDRS ILITTYEGTH NHPLPPAAMA MASATSAAAS TLFSGSTVAT ISASAPFPTV TLDLTRSPDP LQSLRTPAGQ
1101: FQFPFPALGA LPQPPSLPPV FGQTLLNQSR FSGLQETVNA ATAAITADPN FTAVLAAAIK SIIGGNDQAV NSSQNDNKSN HVIDKCTPTF VTPSCSFISP
1201: TPIGSRRTSD GRRYHASSLE GQRLRPCT
0101: LLLPDDEEAL LSGIMDDFDL SGLPGKVDEL EDYDLFGNLG GMELDSDPTE SITVGMAKAS MSDGFLGNGI GQYSLPNSVG AVSGEHPYGE HPSRTLFVRN
0201: INSNVEDSEL QLLFEQYGEI RSLYTACKHR GFVMISYYDI RSARTAMRAL QNKPLRRRKL DIHFSIPKDN PSDKDMNQGT LVIFNLDPSV SNDDLRQIFG
0301: AYGEVKEIRE TPHKQHHKFI EFFDVRAAEA ALRSLNKSDI AGKRIKLEPS RPGGARRNLM QHLTHELEQD ETRVYLHHGG SPINNSPPGP WAHFSSPNDN
0401: IPLQVFSHHG SFLRSSHNQN PHHVGSAPSV VPFQRQYGYF PESAEPSFMN QFALGNIGFN RKGGTGLMNM TPHPTLNQGI ISGSISIGID GLVDWHRSRR
0501: VDNHGSQADK QQYQLDLDKI IKGEDTRTTI MIKNIPNKYT SKMLLAAIDE THSGTYDFLY LPIDFKNKCN VGYAFINMSS PSHVVSFYKA FNGKKWEKFN
0601: SEKVASLAYA RIQGRSALVA HFQNSSLMNE DKRCRPILFD PEGADTGNEE LFPSSSLHIQ QEDGAVSVGV SPESPQGSSP SGKSEKSTLP GTVHFMTQSY
0701: MDNSGGIGVL TLDTSAPLFL ASSLSYGGGG ILKRKQPMDS GGHHGGAGTI EFPFSLNPRR DAETANEALT SKRVVADEVD FFSDEKKKQK KKDTIAASPV
0801: ETDLDLKVPS LGIKKEDLTI QVGDYSTFER LHVHLRSMQA ELARMNEENQ KLRGMLSQVN SSYSALQMQL ATLMQQRNRT PQAHEEKIDA ENGDQGGARV
0901: LRQFLDLGPD ADVDEHSNSS TASLERSSST PENVEVGSMG YGLHKNEGNP REALELTPTA TAEQESTMRR TRVSVRARSE APTITDGCQW RKYGQKIAKG
1001: NPCPRAYYRC TMATGCPVRK QVQRCADDRS ILITTYEGTH NHPLPPAAMA MASATSAAAS TLFSGSTVAT ISASAPFPTV TLDLTRSPDP LQSLRTPAGQ
1101: FQFPFPALGA LPQPPSLPPV FGQTLLNQSR FSGLQETVNA ATAAITADPN FTAVLAAAIK SIIGGNDQAV NSSQNDNKSN HVIDKCTPTF VTPSCSFISP
1201: TPIGSRRTSD GRRYHASSLE GQRLRPCT
001: MELEPNKSLS ADMPSLLSRS SEAFNGGTGY RSSSDLSMFS SSLPTLFHEK LNMTDSDSWL SFDESSPNLN KLVIGNSEKD SLEDVEPDAL EILLPEDENE
101: LLPGLIDELN FTGLPDELDD LEECDVFCTG GGMELDVESQ DNHAVDASGM QISDRGAANA FVPRKRPNTA GRVSVEHPNG EHPSRTLFVR NINSSVEDSE
201: LSALFEPFGE IRSLYTACKS RGFVMISYYD IRAAHAAMRA LQNTLLRKRT LDIHFSIPKE NPSEKDMNQG TLVIFNVDTT VSNDELLQLF GAYGEIREIR
301: ETPNRRFHRF IEYYDVRDAE TALKALNRSE IGGKCIKLEL SRPGGARRLS VPSQSQDLER TEVTNFYNQV GSHVANSPPG NWPIGSPVKG SPSHAFTRPH
401: GLGMVRPVNS DNMPGLASIL PAHPSSFHGF SPVSNDQGLL NHSNQTILNK GLMHNISYGQ PHSLPEHITG GISNSMRFIA PHSSGFGTSS DHRYRWGSPP
501: QHMNYPGYTG VSSSSSSTER PFTVRHGFPF AERQASLLGK YQHHVGSAPS SIHFNTQMNC YTGSPEIPLG FSDMGINRNY NSAHGKANLG VSLPGNSSEQ
601: DFTGFGMSSM PTVPFGGSRG LQSVRPEPFA EQGRIHNHES HNQNQFIDGG RYHIDLDRIA SGDEIRTTLI IKNIPNKYTY KMLVAEIDEK HKGDYDFLCL
701: PTDFKNKCNM GHAFINMVSP LHIVPFQQTF NGKIWEKFNS GKVASLAYAE IQGKSALASY MQTPSSMKEQ KQLFPEVSYH DDGQDANDHE QLFSSIWNIT
801: APDSDWSYTM DLIENPRENG NSKNAAEESS
101: LLPGLIDELN FTGLPDELDD LEECDVFCTG GGMELDVESQ DNHAVDASGM QISDRGAANA FVPRKRPNTA GRVSVEHPNG EHPSRTLFVR NINSSVEDSE
201: LSALFEPFGE IRSLYTACKS RGFVMISYYD IRAAHAAMRA LQNTLLRKRT LDIHFSIPKE NPSEKDMNQG TLVIFNVDTT VSNDELLQLF GAYGEIREIR
301: ETPNRRFHRF IEYYDVRDAE TALKALNRSE IGGKCIKLEL SRPGGARRLS VPSQSQDLER TEVTNFYNQV GSHVANSPPG NWPIGSPVKG SPSHAFTRPH
401: GLGMVRPVNS DNMPGLASIL PAHPSSFHGF SPVSNDQGLL NHSNQTILNK GLMHNISYGQ PHSLPEHITG GISNSMRFIA PHSSGFGTSS DHRYRWGSPP
501: QHMNYPGYTG VSSSSSSTER PFTVRHGFPF AERQASLLGK YQHHVGSAPS SIHFNTQMNC YTGSPEIPLG FSDMGINRNY NSAHGKANLG VSLPGNSSEQ
601: DFTGFGMSSM PTVPFGGSRG LQSVRPEPFA EQGRIHNHES HNQNQFIDGG RYHIDLDRIA SGDEIRTTLI IKNIPNKYTY KMLVAEIDEK HKGDYDFLCL
701: PTDFKNKCNM GHAFINMVSP LHIVPFQQTF NGKIWEKFNS GKVASLAYAE IQGKSALASY MQTPSSMKEQ KQLFPEVSYH DDGQDANDHE QLFSSIWNIT
801: APDSDWSYTM DLIENPRENG NSKNAAEESS
Arabidopsis Description
ML2ML2 [Source:UniProtKB/TrEMBL;Acc:A0A178VQK0]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.