Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EER94230 | Sorghum | cytosol, endoplasmic reticulum, nucleus | 50.35 | 50.53 |
| Os10t0422600-01 | Rice | endoplasmic reticulum | 39.01 | 31.88 |
| KRH35505 | Soybean | nucleus, plastid | 29.79 | 31.58 |
| KRG91310 | Soybean | nucleus, plastid | 29.08 | 30.48 |
| KRH27651 | Soybean | plastid | 27.66 | 30.12 |
| Bra007736.1-P | Field mustard | plastid | 24.47 | 29.61 |
| CDX76690 | Canola | plastid | 24.47 | 29.49 |
| CDY56452 | Canola | plastid | 24.11 | 28.81 |
| KRH77839 | Soybean | plastid | 25.89 | 27.97 |
| KRH32034 | Soybean | mitochondrion | 26.6 | 27.78 |
| CDX93919 | Canola | nucleus | 23.4 | 27.62 |
| VIT_05s0020g03670.t01 | Wine grape | nucleus, plastid | 28.01 | 27.05 |
| KRH71405 | Soybean | mitochondrion, nucleus | 24.47 | 26.24 |
| KRG95554 | Soybean | mitochondrion, nucleus | 26.24 | 26.15 |
| Solyc09g082210.2.1 | Tomato | cytosol, plastid | 26.6 | 25.51 |
| KRH67235 | Soybean | mitochondrion, nucleus | 25.53 | 25.44 |
| AT3G22550.1 | Thale cress | mitochondrion | 23.76 | 25.09 |
| CDX92948 | Canola | mitochondrion | 23.4 | 25.0 |
| Bra001873.1-P | Field mustard | mitochondrion | 23.4 | 25.0 |
| VIT_07s0151g00800.t01 | Wine grape | mitochondrion, nucleus | 25.89 | 24.91 |
| PGSC0003DMT400082082 | Potato | nucleus, plastid | 26.6 | 24.83 |
| CDY34246 | Canola | mitochondrion | 23.05 | 24.81 |
| Bra023820.1-P | Field mustard | mitochondrion | 23.05 | 24.81 |
| CDX98213 | Canola | mitochondrion | 22.7 | 24.43 |
| CDY65610 | Canola | mitochondrion, nucleus | 23.05 | 24.25 |
| Bra039962.1-P | Field mustard | mitochondrion, nucleus | 23.05 | 24.25 |
| AT3G63210.1 | Thale cress | mitochondrion, plastid | 22.34 | 23.95 |
| CDY24316 | Canola | mitochondrion, plastid | 18.44 | 23.85 |
| Zm00001d013595_P001 | Maize | mitochondrion | 26.95 | 23.6 |
| Zm00001d044365_P001 | Maize | cytosol | 20.92 | 22.35 |
| Zm00001d008782_P001 | Maize | nucleus | 26.6 | 21.25 |
| Zm00001d043612_P002 | Maize | plastid | 18.79 | 20.87 |
| Zm00001d039597_P001 | Maize | cytosol | 25.53 | 20.28 |
| GSMUA_Achr4P21250_001 | Banana | nucleus | 26.24 | 20.16 |
| AT1G79970.1 | Thale cress | nucleus, plastid | 17.02 | 20.0 |
| Solyc09g065390.1.1 | Tomato | mitochondrion | 12.77 | 19.57 |
| CDX67936 | Canola | nucleus, plastid | 17.38 | 19.22 |
| GSMUA_Achr4P22610_001 | Banana | nucleus | 25.53 | 19.15 |
| Bra003541.1-P | Field mustard | nucleus, plastid | 18.44 | 18.7 |
| CDX79402 | Canola | nucleus, plastid | 17.73 | 17.99 |
| CDY53722 | Canola | extracellular, vacuole | 23.05 | 17.76 |
| Zm00001d037713_P001 | Maize | cytosol | 19.5 | 16.77 |
| Bra040437.1-P | Field mustard | mitochondrion, plastid | 23.05 | 16.29 |
| PGSC0003DMT400037957 | Potato | plastid | 15.6 | 15.02 |
| Solyc06g009000.1.1 | Tomato | plastid | 14.18 | 13.89 |
Protein Annotations
| EnsemblPlants:Zm00001d032937_P001 | EnsemblPlants:Zm00001d032937_T001 | EnsemblPlantsGene:Zm00001d032937 | InterPro:IPR007650 | InterPro:Zf-FLZ_dom | PANTHER:PTHR33059 |
| PANTHER:PTHR33059:SF27 | PFAM:PF04570 | PFscan:PS51795 | ProteinID:ONM06379.1 | SEG:seg | UniParc:UPI00022179FF |
| UniProt:A0A1D6KV02 | MapMan:27.3.3 | : | : | : | : |
Description
Protein MARD1
Coordinates
chr1:-:244096829..244098160
Molecular Weight (calculated)
29953.4 Da
IEP (calculated)
8.001
GRAVY (calculated)
-0.355
Length
282 amino acids
Sequence
(BLAST)
(BLAST)
001: MLGRMAGPGG GGVSEQRQRE AAFDFGRHTG TAAAVPSSSP HTPMVPPKLF LAAGSGGVVS GEEAFSPPEE LAGGVVVMVS PTSTLQTPTG SASPTSAATS
101: TAVPFSRRGA TSPSSPGGDD RRRCKSRSRI RSQRPWEAWP VGVGLAGALS GDADALPPVA TVLTGQRIRP WPCRSSASSV LGLGSPESRS RCRGVLSPRK
201: MMEASEEDYT RVIARGPNPR TTHIFDDRVV VVEDEFLRWC HGCSKDLGQG NDIFMYRGEM AFCSHECRYR VMLLLDEEGE SC
101: TAVPFSRRGA TSPSSPGGDD RRRCKSRSRI RSQRPWEAWP VGVGLAGALS GDADALPPVA TVLTGQRIRP WPCRSSASSV LGLGSPESRS RCRGVLSPRK
201: MMEASEEDYT RVIARGPNPR TTHIFDDRVV VVEDEFLRWC HGCSKDLGQG NDIFMYRGEM AFCSHECRYR VMLLLDEEGE SC
001: MLRNKPRAAV TTKKQTSLLM ADQPPPPKPN TCHCSPSLFS SPKFRFFTSK MMMTPFDSDF SLVSPTSILE ANPSIFSSKN PKPVSYFEPT IPNPQRFHSP
101: DVFGLADLVK DGDSNRDHSR KPVNKMVLFG SKLRVQIPSS ADFGTKTGIR YPPCQLSPCV QTKVLAVSEI DQTEDYTRVI SHGPNPTITH IFDNSVFVEA
201: TPCSVPLPQP AMETKSTESF LSRCFTCKKN LDQKQDIYIY RGEKGFCSSE CRYQEMLLDQ MET
101: DVFGLADLVK DGDSNRDHSR KPVNKMVLFG SKLRVQIPSS ADFGTKTGIR YPPCQLSPCV QTKVLAVSEI DQTEDYTRVI SHGPNPTITH IFDNSVFVEA
201: TPCSVPLPQP AMETKSTESF LSRCFTCKKN LDQKQDIYIY RGEKGFCSSE CRYQEMLLDQ MET
Arabidopsis Description
MARD1Protein MARD1 [Source:UniProtKB/Swiss-Prot;Acc:Q8LGS1]
SUBAcon: [mitochondrion,plastid]
SUBAcon: [mitochondrion,plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.