Factsheet for Bra040437.1-P

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid

Predictor Summary:

plastid 3
mitochondrion 4
nucleus 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra000047.1-P
Bra001342.1-P
Bra006136.1-P
Bra021765.1-P
Bra023354.1-P
Bra025379.1-P
Bra029726.1-P
Bra033088.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G63210.1	Bra021765.1-P	AT2G31985.1	21798944
AT3G63210.1	Bra000047.1-P	AT2G38270.1	21798944
AT3G63210.1	Bra001342.1-P	AT3G08850.1	21798944
AT3G63210.1	Bra029726.1-P	AT3G08850.1	21798944
AT3G63210.1	Bra025379.1-P	AT3G29160.1	21798944
AT3G63210.1	Bra033088.1-P	AT3G29160.1	21798944
AT3G63210.1	Bra006136.1-P	AT5G11980.1	21798944
AT3G63210.1	Bra023354.1-P	AT5G11980.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY53722	Canola	extracellular, vacuole	90.73	98.91
Bra007736.1-P	Field mustard	plastid	36.59	62.66
AT3G63210.1	Thale cress	mitochondrion, plastid	32.58	49.43
GSMUA_Achr3P25470_001	Banana	mitochondrion	18.55	31.36
Bra023820.1-P	Field mustard	mitochondrion	19.8	30.15
GSMUA_Achr1P14130_001	Banana	mitochondrion	21.55	30.07
Bra001873.1-P	Field mustard	mitochondrion	19.8	29.92
Os03t0665200-01	Rice	nucleus	21.8	28.81
Bra039962.1-P	Field mustard	mitochondrion, nucleus	19.05	28.36
EER91113	Sorghum	mitochondrion	21.55	27.39
GSMUA_Achr2P08850_001	Banana	plastid	20.05	26.85
Zm00001d013595_P001	Maize	mitochondrion	21.3	26.4
TraesCS4D01G016600.1	Wheat	mitochondrion	18.3	26.07
GSMUA_Achr8P20380_001	Banana	mitochondrion, nucleus	17.79	25.18
GSMUA_Achr9P25720_001	Banana	nucleus	20.55	25.0
TraesCS4A01G295300.1	Wheat	plastid	18.55	24.75
Bra000551.1-P	Field mustard	cytosol, mitochondrion	15.79	24.71
Bra008960.1-P	Field mustard	nucleus, plastid	16.79	24.36
GSMUA_Achr6P22030_001	Banana	cytosol	18.05	23.84
Os10t0422600-01	Rice	endoplasmic reticulum	20.3	23.48
Zm00001d032937_P001	Maize	cytosol	16.29	23.05
TraesCS4B01G018400.1	Wheat	plastid	17.54	23.03
Bra007780.1-P	Field mustard	nucleus	16.29	21.96
Bra023326.1-P	Field mustard	plastid	12.53	21.93
EER94230	Sorghum	cytosol, endoplasmic reticulum, nucleus	15.29	21.71
GSMUA_Achr4P22610_001	Banana	nucleus	19.55	20.74
GSMUA_Achr4P21250_001	Banana	nucleus	17.54	19.07
Bra003541.1-P	Field mustard	nucleus, plastid	11.78	16.91
HORVU4Hr1G002700.4	Barley	cytosol, golgi, mitochondrion	15.04	13.73
HORVU3Hr1G018540.1	Barley	extracellular	2.01	6.15

Protein Annotations

EnsemblPlants:Bra040437.1	EnsemblPlants:Bra040437.1-P	EnsemblPlantsGene:Bra040437	InterPro:IPR007650	InterPro:Zf-FLZ_dom	PANTHER:PTHR33059
PANTHER:PTHR33059:SF15	PFAM:PF04570	PFscan:PS51795	SEG:seg	UniParc:UPI000254525B	UniProt:M4FH59
MapMan:27.3.3	:	:	:	:	:

Description

AT3G63210 (E=5e-090) MARD1 | MARD1

Coordinates

chrA04:-:42324..44429

Molecular Weight (calculated)

44212.1 Da

IEP (calculated)

8.109

GRAVY (calculated)

-0.197

Length

399 amino acids

Sequence
(BLAST)

001: MSYLLLVSSG FRLSELWSAI NRSRVLVLES RRGCGKDGAV KTSVVVSFSP GDGGFQSSVA AGPCLRGGEA FSVPPSLALV PGMCCSVMFS SEESEALRWK
101: GYDACDGFLW VMRLTVTTDE ISPRRLILSV FRTQKMMAVM TRGAIDAWFA PVFRSNKASL MAADQLPSPP TPNTYYSSDF FTSPKFRFLA SKITPFDSII
201: SPTSILEANP SFFSSINPKP TSYLDPTIPK PQRFHPPEPF GLADLVKSRD HSSKPVNKMV LFGSKLRFQI PCADFGTKTG PTSQMRHPHG QLKPCLQTKV
301: LTVSEIDQTE DYTCVISHGP NPTITHIFDN SVFVEEATPP CSVPLPQETK KMDTGFLSNC YTCNKKLDQK QDIYIYRGEK GFCSSECRYQ EMLVDQIET

Best Arabidopsis Sequence Match ( AT3G63210.1 )
(BLAST)

001: MLRNKPRAAV TTKKQTSLLM ADQPPPPKPN TCHCSPSLFS SPKFRFFTSK MMMTPFDSDF SLVSPTSILE ANPSIFSSKN PKPVSYFEPT IPNPQRFHSP
101: DVFGLADLVK DGDSNRDHSR KPVNKMVLFG SKLRVQIPSS ADFGTKTGIR YPPCQLSPCV QTKVLAVSEI DQTEDYTRVI SHGPNPTITH IFDNSVFVEA
201: TPCSVPLPQP AMETKSTESF LSRCFTCKKN LDQKQDIYIY RGEKGFCSSE CRYQEMLLDQ MET

Arabidopsis Description

MARD1Protein MARD1 [Source:UniProtKB/Swiss-Prot;Acc:Q8LGS1]
SUBAcon: [mitochondrion,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.