Factsheet for GSMUA_Achr4P22610_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 3
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr3P32460_001
GSMUA_Achr5P14210_001
GSMUA_Achr5P14390_001
GSMUA_AchrUn_...
GSMUA_AchrUn_...
GSMUA_AchrUn_...
GSMUA_AchrUn_...

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G63210.1	GSMUA_AchrUn_...	AT2G31985.1	21798944
AT3G63210.1	GSMUA_Achr5P14210_001	AT2G38270.1	21798944
AT3G63210.1	GSMUA_Achr5P14390_001	AT3G08850.1	21798944
AT3G63210.1	GSMUA_AchrUn_...	AT3G08850.1	21798944
AT3G63210.1	GSMUA_AchrUn_...	AT3G08850.1	21798944
AT3G63210.1	GSMUA_Achr10P...	AT3G29160.1	21798944
AT3G63210.1	GSMUA_AchrUn_...	AT3G29160.1	21798944
AT3G63210.1	GSMUA_Achr3P32460_001	AT5G11980.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr3P25470_001	Banana	mitochondrion	27.66	44.07
Solyc09g082210.2.1	Tomato	cytosol, plastid	32.18	41.16
VIT_05s0020g03670.t01	Wine grape	nucleus, plastid	31.91	41.1
PGSC0003DMT400082082	Potato	nucleus, plastid	32.45	40.4
GSMUA_Achr1P14130_001	Banana	mitochondrion	30.59	40.21
GSMUA_Achr9P25720_001	Banana	nucleus	33.51	38.41
GSMUA_Achr2P08850_001	Banana	plastid	30.32	38.26
VIT_07s0151g00800.t01	Wine grape	mitochondrion, nucleus	29.52	37.88
KRH71405	Soybean	mitochondrion, nucleus	26.33	37.64
KRH35505	Soybean	nucleus, plastid	26.33	37.22
TraesCS4D01G016600.1	Wheat	mitochondrion	27.66	37.14
GSMUA_Achr4P21250_001	Banana	nucleus	36.17	37.06
KRG91310	Soybean	nucleus, plastid	26.33	36.8
KRH27651	Soybean	plastid	25.27	36.68
KRH77839	Soybean	plastid	25.27	36.4
Bra023820.1-P	Field mustard	mitochondrion	25.27	36.26
CDX98213	Canola	mitochondrion	25.27	36.26
AT3G22550.1	Thale cress	mitochondrion	25.53	35.96
CDY34246	Canola	mitochondrion	25.0	35.88
GSMUA_Achr8P20380_001	Banana	mitochondrion, nucleus	26.86	35.82
Os03t0665200-01	Rice	nucleus	28.72	35.76
EER91113	Sorghum	mitochondrion	29.79	35.67
Bra001873.1-P	Field mustard	mitochondrion	25.0	35.61
KRH32034	Soybean	mitochondrion	25.53	35.56
TraesCS4A01G295300.1	Wheat	plastid	28.19	35.45
Bra039962.1-P	Field mustard	mitochondrion, nucleus	25.27	35.45
CDX92948	Canola	mitochondrion	24.73	35.23
CDY65610	Canola	mitochondrion, nucleus	25.0	35.07
CDY24316	Canola	mitochondrion, plastid	20.21	34.86
Solyc09g065390.1.1	Tomato	mitochondrion	17.02	34.78
Zm00001d013595_P001	Maize	mitochondrion	29.79	34.78
TraesCS4B01G018400.1	Wheat	plastid	27.13	33.55
CDX93919	Canola	nucleus	21.01	33.05
Bra007736.1-P	Field mustard	plastid	20.21	32.62
AT3G63210.1	Thale cress	mitochondrion, plastid	22.61	32.32
KRH67235	Soybean	mitochondrion, nucleus	24.2	32.16
KRG95554	Soybean	mitochondrion, nucleus	23.94	31.8
CDY56452	Canola	plastid	19.68	31.36
CDX76690	Canola	plastid	19.15	30.77
GSMUA_Achr6P22030_001	Banana	cytosol	23.94	29.8
GSMUA_AchrUn_...	Banana	nucleus	26.06	28.0
Os10t0422600-01	Rice	endoplasmic reticulum	24.2	26.38
Zm00001d032937_P001	Maize	cytosol	19.15	25.53
EER94230	Sorghum	cytosol, endoplasmic reticulum, nucleus	18.88	25.27
GSMUA_Achr7P13270_001	Banana	nucleus	22.07	22.74
CDY53722	Canola	extracellular, vacuole	20.74	21.31
GSMUA_Achr7P09810_001	Banana	mitochondrion	22.61	20.48
AT1G79970.1	Thale cress	nucleus, plastid	13.03	20.42
CDX67936	Canola	nucleus, plastid	13.83	20.39
Solyc06g009000.1.1	Tomato	plastid	15.43	20.14
HORVU4Hr1G002700.4	Barley	cytosol, golgi, mitochondrion	23.4	20.14
Bra003541.1-P	Field mustard	nucleus, plastid	14.63	19.78
Bra040437.1-P	Field mustard	mitochondrion, plastid	20.74	19.55
PGSC0003DMT400037957	Potato	plastid	14.36	18.43
GSMUA_Achr10P...	Banana	cytosol, mitochondrion	16.22	18.32
CDX79402	Canola	nucleus, plastid	13.3	17.99

Protein Annotations

EnsemblPlants:GSMUA_Achr4P22610_001	EnsemblPlants:GSMUA_Achr4T22610_001	EnsemblPlantsGene:GSMUA_Achr4G22610_001	InterPro:IPR007650	InterPro:Zf-FLZ_dom	PANTHER:PTHR33059
PANTHER:PTHR33059:SF26	PFAM:PF04570	PFscan:PS51795	SEG:seg	UniParc:UPI0002952D1E	UniProt:M0SR74
MapMan:27.3.3	:	:	:	:	:

Description

Putative uncharacterized protein [Source:GMGC_GENE;Acc:GSMUA_Achr4G22610_001]

Coordinates

chr4:-:22909628..22911621

Molecular Weight (calculated)

41228.1 Da

IEP (calculated)

8.069

GRAVY (calculated)

-0.260

Length

376 amino acids

Sequence
(BLAST)

001: MLRKRSRATD GKQVLMPDAK PRPSSLFPLC LSYHGSSDSE AAMSPTSILE TKNLSSTGNH FFSDRQPNKP PFDAVTTTTT TTTATSSAIG LGIIDALNGE
101: KSVAISPKAQ SRMLLLGSQL KIQIPSLCSG SMSPVGSPIE FGLKNRDSQL ALLSPAPASS PRVFTGSIPM SEMELSEDYT CVISHGPNPR TTHIFDNCVV
201: ERCGDGSSAA DRGGYLLDDF LSYCHACKKN LGQGKDTFMY RGEKAFCSSE CRNKEMLNDG GMEKCSEESS LTIDGSAQTN VGFGTTIFWL RERERDDKCV
301: TAICCHARFW YQSFSWLREP HVKVICQLLS SCYFTLRRPG GFMQPLLPHI FRSSYSLTYS FCFLCGSSRA SRVLSC

Best Arabidopsis Sequence Match ( AT3G22550.1 )
(BLAST)

001: MLKKRSRSKQ ALMAETNQSQ NQKQSKTTPF PRLFTAFSSF KSFTENDAVA SPTSILDTKP FSVLKNPFGS DNPKTQEPET RLKLEPKRIG LAIVDSLIQD
101: ETPEPGPRSG TILFGSQLRI RVPDSPISSS DFGIKTRNSQ PETKKPGSES GLGSPRIISG YFPASDMELS EDYTCVTCHG PNPRTIHIFD NCIVESQPGV
201: VFFRSSDPVN ESDSDYSPPD SFLSCCCNCK KSLGPRDDIF MYRGDRAFCS SECRSIEMMM SEENDTK

Arabidopsis Description

NAD(P)H-quinone oxidoreductase subunit, putative (DUF581) [Source:UniProtKB/TrEMBL;Acc:Q8L471]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.