CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid

Predictor Summary:

plastid 3
mitochondrion 3
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX92948	Canola	mitochondrion	73.39	60.61
CDY65610	Canola	mitochondrion, nucleus	64.68	52.61
CDY34246	Canola	mitochondrion	60.09	50.0
CDX98213	Canola	mitochondrion	60.09	50.0
AT3G22550.1	Thale cress	mitochondrion	57.8	47.19
CDX93919	Canola	nucleus	31.65	28.87
GSMUA_Achr1P14130_001	Banana	mitochondrion	37.61	28.67
CDY56452	Canola	plastid	30.73	28.39
CDX76690	Canola	plastid	30.28	28.21
GSMUA_Achr2P08850_001	Banana	plastid	38.53	28.19
GSMUA_Achr3P25470_001	Banana	mitochondrion	30.28	27.97
TraesCS4D01G016600.1	Wheat	mitochondrion	35.32	27.5
Os03t0665200-01	Rice	nucleus	35.78	25.83
GSMUA_Achr8P20380_001	Banana	mitochondrion, nucleus	33.03	25.53
TraesCS4A01G295300.1	Wheat	plastid	34.4	25.08
GSMUA_Achr9P25720_001	Banana	nucleus	37.16	24.7
TraesCS4B01G018400.1	Wheat	plastid	33.95	24.34
EER91113	Sorghum	mitochondrion	33.03	22.93
CDX69754	Canola	nucleus, plastid	27.52	21.82
CDX76742	Canola	nucleus	29.82	21.67
CDY38508	Canola	cytosol	30.28	21.22
GSMUA_Achr6P22030_001	Banana	cytosol	29.36	21.19
Zm00001d013595_P001	Maize	mitochondrion	30.73	20.81
CDX97112	Canola	nucleus, plastid	25.69	20.44
CDY11512	Canola	nucleus	27.98	20.33
CDX83224	Canola	cytosol	30.28	20.25
GSMUA_Achr4P22610_001	Banana	nucleus	34.86	20.21
EER94230	Sorghum	cytosol, endoplasmic reticulum, nucleus	25.23	19.57
CDX85711	Canola	plastid	19.72	19.03
GSMUA_Achr4P21250_001	Banana	nucleus	31.19	18.53
Zm00001d032937_P001	Maize	cytosol	23.85	18.44
CDY53722	Canola	extracellular, vacuole	30.73	18.31
Os10t0422600-01	Rice	endoplasmic reticulum	28.44	17.97
CDX67936	Canola	nucleus, plastid	18.81	16.08
CDX79402	Canola	nucleus, plastid	19.72	15.47
HORVU4Hr1G002700.4	Barley	cytosol, golgi, mitochondrion	25.69	12.81
HORVU3Hr1G018540.1	Barley	extracellular	3.67	6.15

Protein Annotations

EnsemblPlants:CDY24316	EnsemblPlantsGene:GSBRNA2T00026510001	InterPro:IPR007650	InterPro:Zf-FLZ_dom	PANTHER:PTHR33059	PANTHER:PTHR33059:SF26
PFAM:PF04570	PFscan:PS51795	ProteinID:CDY24316	ProteinID:CDY24316.1	UniParc:UPI0004EEE664	UniProt:A0A078GG08
MapMan:27.3.3	:	:	:	:	:

Description

BnaC03g42890DBnaC03g42890D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GG08]

Coordinates

chrLK032156:-:589102..590562

Molecular Weight (calculated)

24237.7 Da

IEP (calculated)

8.572

GRAVY (calculated)

-0.637

Length

218 amino acids

Sequence
(BLAST)

001: MLNKRSRSKQ TLMANTNQKQ TRKSTNPRSG SSSNPTKRIG LALVDTLIQE EPGFSRPRSG SILFGSQLRI RVPDYPRSSA DFGTKTKNSP ISPPPEETKK
101: LVTGSGLGSA RIVTTYFPTS DMELSEDYTC VTCHGPNPRT IHIFDNCIVE SPPGVVFFRR SDPVHESDYL PPDSFLSTCC NCKKNLGPRD DIFIYRGGRA
201: FCSSECRSLE MMSEENDI

Best Arabidopsis Sequence Match ( AT3G22550.1 )
(BLAST)

001: MLKKRSRSKQ ALMAETNQSQ NQKQSKTTPF PRLFTAFSSF KSFTENDAVA SPTSILDTKP FSVLKNPFGS DNPKTQEPET RLKLEPKRIG LAIVDSLIQD
101: ETPEPGPRSG TILFGSQLRI RVPDSPISSS DFGIKTRNSQ PETKKPGSES GLGSPRIISG YFPASDMELS EDYTCVTCHG PNPRTIHIFD NCIVESQPGV
201: VFFRSSDPVN ESDSDYSPPD SFLSCCCNCK KSLGPRDDIF MYRGDRAFCS SECRSIEMMM SEENDTK

Arabidopsis Description

NAD(P)H-quinone oxidoreductase subunit, putative (DUF581) [Source:UniProtKB/TrEMBL;Acc:Q8L471]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.