CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus

Predictor Summary:

nucleus 3
plastid 1
mitochondrion 4

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra039962.1-P	Field mustard	mitochondrion, nucleus	95.9	95.9
CDX92948	Canola	mitochondrion	79.48	80.68
CDX98213	Canola	mitochondrion	77.24	79.01
CDY34246	Canola	mitochondrion	76.87	78.63
AT3G22550.1	Thale cress	mitochondrion	73.88	74.16
CDY24316	Canola	mitochondrion, plastid	52.61	64.68
GSMUA_Achr3P25470_001	Banana	mitochondrion	35.07	39.83
GSMUA_Achr1P14130_001	Banana	mitochondrion	37.69	35.31
GSMUA_Achr2P08850_001	Banana	plastid	37.31	33.56
GSMUA_Achr8P20380_001	Banana	mitochondrion, nucleus	34.7	32.98
CDX76690	Canola	plastid	28.36	32.48
GSMUA_Achr9P25720_001	Banana	nucleus	39.18	32.01
CDX93919	Canola	nucleus	28.36	31.8
Os03t0665200-01	Rice	nucleus	35.82	31.79
TraesCS4D01G016600.1	Wheat	mitochondrion	32.84	31.43
CDY56452	Canola	plastid	26.87	30.51
EER91113	Sorghum	mitochondrion	35.07	29.94
TraesCS4A01G295300.1	Wheat	plastid	33.21	29.77
TraesCS4B01G018400.1	Wheat	plastid	33.21	29.28
CDX69754	Canola	nucleus, plastid	27.99	27.27
Zm00001d013595_P001	Maize	mitochondrion	32.46	27.02
CDX76742	Canola	nucleus	29.85	26.67
CDX97112	Canola	nucleus, plastid	27.24	26.64
CDY11512	Canola	nucleus	29.48	26.33
GSMUA_Achr6P22030_001	Banana	cytosol	29.1	25.83
CDX85711	Canola	plastid	21.64	25.66
GSMUA_Achr4P22610_001	Banana	nucleus	35.07	25.0
CDX83224	Canola	cytosol	29.85	24.54
EER94230	Sorghum	cytosol, endoplasmic reticulum, nucleus	25.37	24.2
CDY38508	Canola	cytosol	27.99	24.12
GSMUA_Achr4P21250_001	Banana	nucleus	32.46	23.71
Zm00001d032937_P001	Maize	cytosol	24.25	23.05
Os10t0422600-01	Rice	endoplasmic reticulum	29.1	22.61
CDX67936	Canola	nucleus, plastid	20.52	21.57
CDY53722	Canola	extracellular, vacuole	28.73	21.04
CDX79402	Canola	nucleus, plastid	21.64	20.86
HORVU4Hr1G002700.4	Barley	cytosol, golgi, mitochondrion	27.61	16.93
HORVU3Hr1G018540.1	Barley	extracellular	4.1	8.46

Protein Annotations

EnsemblPlants:CDY65610	EnsemblPlantsGene:GSBRNA2T00046910001	InterPro:IPR007650	InterPro:Zf-FLZ_dom	PANTHER:PTHR33059	PANTHER:PTHR33059:SF26
PFAM:PF04570	PFscan:PS51795	ProteinID:CDY65610	ProteinID:CDY65610.1	UniParc:UPI0004EE3F89	UniProt:A0A078JGG8
MapMan:27.3.3	:	:	:	:	:

Description

BnaC05g51730DBnaC05g51730D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JGG8]

Coordinates

chrLK034859:+:18101..20334

Molecular Weight (calculated)

29849.3 Da

IEP (calculated)

6.510

GRAVY (calculated)

-0.581

Length

268 amino acids

Sequence
(BLAST)

001: MLKKRSRSKQ ASLMADTNQK QSKPTPFPRL FTAFSSFKSF TENDAVASPT SILDTKPFTV LKNPFGSDNP KPYEPETRLK LEPKRIGLAI VDSLVQEENQ
101: EPGFSRPRSG TIIFGSQLRI RVPDPPRSSS DFGIKTKNPP VSPSPEEMKK TVSGSGLASP RIFTGYFSTS EMELSEDYTC VTCHGPNPRT IHIFDNCIIE
201: SQPGVVLFRS SDPVNESDCL PSDSFLSTCC NCKKDLGPRD DIFMYRGDRA FCSSECRSLE MMSEENDI

Best Arabidopsis Sequence Match ( AT3G22550.1 )
(BLAST)

001: MLKKRSRSKQ ALMAETNQSQ NQKQSKTTPF PRLFTAFSSF KSFTENDAVA SPTSILDTKP FSVLKNPFGS DNPKTQEPET RLKLEPKRIG LAIVDSLIQD
101: ETPEPGPRSG TILFGSQLRI RVPDSPISSS DFGIKTRNSQ PETKKPGSES GLGSPRIISG YFPASDMELS EDYTCVTCHG PNPRTIHIFD NCIVESQPGV
201: VFFRSSDPVN ESDSDYSPPD SFLSCCCNCK KSLGPRDDIF MYRGDRAFCS SECRSIEMMM SEENDTK

Arabidopsis Description

NAD(P)H-quinone oxidoreductase subunit, putative (DUF581) [Source:UniProtKB/TrEMBL;Acc:Q8L471]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.