CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, nucleus, cytosol

Predictor Summary:

nucleus 2
cytosol 1
plastid 1
mitochondrion 1
endoplasmic reticulum 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EER92716
EES01406
EES05730
EES09081
EES16486
EES16504
EES19859
OQU82706

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G63210.1	EES05730	AT2G31985.1	21798944
AT3G63210.1	EES09081	AT2G38270.1	21798944
AT3G63210.1	EES16486	AT2G38270.1	21798944
AT3G63210.1	EES16504	AT3G08850.1	21798944
AT3G63210.1	OQU82706	AT3G08850.1	21798944
AT3G63210.1	EES01406	AT3G29160.1	21798944
AT3G63210.1	EES19859	AT3G29160.1	21798944
AT3G63210.1	EER92716	AT5G11980.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d032937_P001	Maize	cytosol	50.53	50.35
KRG91310	Soybean	nucleus, plastid	25.98	27.14
Bra007736.1-P	Field mustard	plastid	22.42	27.04
KRH35505	Soybean	nucleus, plastid	25.27	26.69
KRH32034	Soybean	mitochondrion	25.27	26.3
KRH27651	Soybean	plastid	24.2	26.25
CDX76690	Canola	plastid	21.71	26.07
KRH77839	Soybean	plastid	24.2	26.05
CDX93919	Canola	nucleus	21.71	25.52
KRG95554	Soybean	mitochondrion, nucleus	25.62	25.44
CDY56452	Canola	plastid	21.35	25.42
CDY65610	Canola	mitochondrion, nucleus	24.2	25.37
CDY24316	Canola	mitochondrion, plastid	19.57	25.23
Solyc09g082210.2.1	Tomato	cytosol, plastid	26.33	25.17
Bra001873.1-P	Field mustard	mitochondrion	23.49	25.0
CDX92948	Canola	mitochondrion	23.49	25.0
VIT_05s0020g03670.t01	Wine grape	nucleus, plastid	25.98	25.0
EER91113	Sorghum	mitochondrion	27.76	24.84
PGSC0003DMT400082082	Potato	nucleus, plastid	26.69	24.83
AT3G22550.1	Thale cress	mitochondrion	23.49	24.72
Bra039962.1-P	Field mustard	mitochondrion, nucleus	23.49	24.63
Bra023820.1-P	Field mustard	mitochondrion	22.78	24.43
KRH67235	Soybean	mitochondrion, nucleus	24.56	24.38
CDY34246	Canola	mitochondrion	22.42	24.05
CDX98213	Canola	mitochondrion	22.42	24.05
AT3G63210.1	Thale cress	mitochondrion, plastid	22.42	23.95
EES00181	Sorghum	cytosol, extracellular, nucleus	23.84	23.59
KRH71405	Soybean	mitochondrion, nucleus	22.06	23.57
Os10t0422600-01	Rice	endoplasmic reticulum	28.11	22.9
VIT_07s0151g00800.t01	Wine grape	mitochondrion, nucleus	23.49	22.53
EES00998	Sorghum	cytosol, plastid	21.35	22.14
AT1G79970.1	Thale cress	nucleus, plastid	16.73	19.58
Solyc09g065390.1.1	Tomato	mitochondrion	12.46	19.02
GSMUA_Achr4P22610_001	Banana	nucleus	25.27	18.88
EES01375	Sorghum	plastid	17.44	18.63
OQU77551	Sorghum	mitochondrion, plastid	23.49	17.79
CDX67936	Canola	nucleus, plastid	16.01	17.65
Bra003541.1-P	Field mustard	nucleus, plastid	17.08	17.27
CDY53722	Canola	extracellular, vacuole	21.71	16.67
GSMUA_Achr4P21250_001	Banana	nucleus	21.35	16.35
CDX79402	Canola	nucleus, plastid	15.3	15.47
Bra040437.1-P	Field mustard	mitochondrion, plastid	21.71	15.29
Solyc06g009000.1.1	Tomato	plastid	13.17	12.85
PGSC0003DMT400037957	Potato	plastid	13.17	12.63

Protein Annotations

EnsemblPlants:EER94230	EnsemblPlantsGene:SORBI_3001G245300	EntrezGene:8059457	InterPro:IPR007650	InterPro:Zf-FLZ_dom	ncoils:Coil
PANTHER:PTHR33059	PANTHER:PTHR33059:SF27	PFAM:PF04570	PFscan:PS51795	ProteinID:EER94230	ProteinID:EER94230.1
ProteinID:OQU91766.1	RefSeq:XP_002467232.1	SEG:seg	UniParc:UPI0001A832CD	UniProt:C5X1I3	MapMan:27.3.3

Description

hypothetical protein

Coordinates

chr1:-:25618174..25620811

Molecular Weight (calculated)

29512.8 Da

IEP (calculated)

7.376

GRAVY (calculated)

-0.273

Length

281 amino acids

Sequence
(BLAST)

001: MLGRTAGPGG GGVSEQRRRE AAFDFGRHTG TVAAPSPSLP PAPMVPPKLF LAAAAAAGMS GVVVSGEDAL FSPPLELAAA VVVMVSPTST LQAPTGSPTS
101: SPAATAVPFS RRGVRATSSS AAAGGDDRRR RGCKSSSRSR SQRPWEARPV GVGLAGALMN GDADDGLPPA AATVLTSTGQ RIRPCRSSAS PESTVLSARE
201: VMEASEDYTR VIARGPNPRT THIFDDGVVV VEDEFLRWCH GCSKDLGRGN DIFMYRGEMA FCSHECRYRE MLLFDEQEES S

Best Arabidopsis Sequence Match ( AT3G63210.1 )
(BLAST)

001: MLRNKPRAAV TTKKQTSLLM ADQPPPPKPN TCHCSPSLFS SPKFRFFTSK MMMTPFDSDF SLVSPTSILE ANPSIFSSKN PKPVSYFEPT IPNPQRFHSP
101: DVFGLADLVK DGDSNRDHSR KPVNKMVLFG SKLRVQIPSS ADFGTKTGIR YPPCQLSPCV QTKVLAVSEI DQTEDYTRVI SHGPNPTITH IFDNSVFVEA
201: TPCSVPLPQP AMETKSTESF LSRCFTCKKN LDQKQDIYIY RGEKGFCSSE CRYQEMLLDQ MET

Arabidopsis Description

MARD1Protein MARD1 [Source:UniProtKB/Swiss-Prot;Acc:Q8LGS1]
SUBAcon: [mitochondrion,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.