CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, nucleus, cytosol

Predictor Summary:

extracellular 3
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2
mitochondrion 1
nucleus 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, extracellular, nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	extracellular
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os01t0180400-01	Rice	cytosol	35.56	53.72
OQU77551	Sorghum	mitochondrion, plastid	35.92	27.49
GSMUA_Achr7P13270_001	Banana	nucleus	34.15	26.58
EER91113	Sorghum	mitochondrion	28.17	25.48
GSMUA_AchrUn_...	Banana	nucleus	31.34	25.43
Bra000551.1-P	Field mustard	cytosol, mitochondrion	21.48	23.92
EER94230	Sorghum	cytosol, endoplasmic reticulum, nucleus	23.59	23.84
CDX97112	Canola	nucleus, plastid	22.18	22.99
Bra007780.1-P	Field mustard	nucleus	23.94	22.97
CDX69754	Canola	nucleus, plastid	22.18	22.91
Bra008960.1-P	Field mustard	nucleus, plastid	21.83	22.55
CDX76742	Canola	nucleus	23.59	22.33
CDY11512	Canola	nucleus	23.59	22.33
EES00998	Sorghum	cytosol, plastid	21.13	22.14
VIT_04s0008g04490.t01	Wine grape	nucleus	30.99	21.41
CDX85711	Canola	plastid	16.9	21.24
KRH23481	Soybean	plastid	29.58	21.11
Bra023326.1-P	Field mustard	plastid	16.55	20.61
CDY38508	Canola	cytosol	22.18	20.26
AT2G25690.1	Thale cress	cytosol	22.54	19.75
CDX83224	Canola	cytosol	22.54	19.63
PGSC0003DMT400037607	Potato	nucleus	27.11	19.59
Solyc08g067970.2.1	Tomato	nucleus	27.46	19.21
AT5G11460.1	Thale cress	cytosol, plastid	23.24	19.19
KRH05019	Soybean	nucleus	26.76	19.05
EES01375	Sorghum	plastid	17.61	19.01
KRH16080	Soybean	nucleus	27.11	18.97
KRH09840	Soybean	plastid	26.41	18.89
KRH52543	Soybean	nucleus	27.82	18.72
KRH61879	Soybean	extracellular	28.87	18.51

Protein Annotations

EnsemblPlants:EES00181	EnsemblPlantsGene:SORBI_3003G041900	EntrezGene:8078768	InterPro:IPR007650	InterPro:Zf-FLZ_dom	PANTHER:PTHR33059
PANTHER:PTHR33059:SF12	PFAM:PF04570	PFscan:PS51795	ProteinID:EES00181	ProteinID:EES00181.2	RefSeq:XP_002455061.1
SEG:seg	UniParc:UPI0009DC9158	UniProt:C5XMP1	MapMan:27.3.3	:	:

Description

hypothetical protein

Coordinates

chr3:+:3900048..3902089

Molecular Weight (calculated)

29637.7 Da

IEP (calculated)

6.169

GRAVY (calculated)

-0.279

Length

284 amino acids

Sequence
(BLAST)

001: MTWGAPGLVD ALAADTAVAA NCLLSPRLRL VRPHTSPPKD CGGGHSQPEL GKTMSCPAPD TTAAAAGGGG MSVPCSRFQF HRHHGDLKSG PETTRSESET
101: AAGAHLVISN ASKRHSFDLG KLPGPGSLPA ASTAARRFVG SVSASEIEQS EDYTRIIARG PNPKTTHIFG DCILEPRTVG GGGDHEAAAM ESEEGAAGCC
201: YFVVKSAAAG ADDFLSSCFA CKKKLEGNDI YIYRGEKAFC SANCRDQEIQ LEEEAENKTG SVSPRSSCSS FHDDIFMAGM VVAI

Best Arabidopsis Sequence Match ( AT3G63210.1 )
(BLAST)

001: MLRNKPRAAV TTKKQTSLLM ADQPPPPKPN TCHCSPSLFS SPKFRFFTSK MMMTPFDSDF SLVSPTSILE ANPSIFSSKN PKPVSYFEPT IPNPQRFHSP
101: DVFGLADLVK DGDSNRDHSR KPVNKMVLFG SKLRVQIPSS ADFGTKTGIR YPPCQLSPCV QTKVLAVSEI DQTEDYTRVI SHGPNPTITH IFDNSVFVEA
201: TPCSVPLPQP AMETKSTESF LSRCFTCKKN LDQKQDIYIY RGEKGFCSSE CRYQEMLLDQ MET

Arabidopsis Description

MARD1Protein MARD1 [Source:UniProtKB/Swiss-Prot;Acc:Q8LGS1]
SUBAcon: [mitochondrion,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.