Factsheet for VIT_04s0008g04490.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400037607	Potato	nucleus	47.45	49.62
Solyc08g067970.2.1	Tomato	nucleus	47.93	48.52
KRH05019	Soybean	nucleus	46.47	47.87
KRH61879	Soybean	extracellular	51.34	47.63
Os01t0180400-01	Rice	cytosol	19.71	43.09
KRH52543	Soybean	nucleus	43.07	41.94
GSMUA_Achr7P13270_001	Banana	nucleus	35.77	40.27
CDX69754	Canola	nucleus, plastid	26.52	39.64
KRH16080	Soybean	nucleus	37.71	38.18
Bra008960.1-P	Field mustard	nucleus, plastid	25.06	37.45
GSMUA_AchrUn_...	Banana	nucleus	31.63	37.14
Bra000551.1-P	Field mustard	cytosol, mitochondrion	22.63	36.47
CDY11512	Canola	nucleus	26.52	36.33
CDX97112	Canola	nucleus, plastid	23.6	35.4
CDY38508	Canola	cytosol	26.76	35.37
CDX76742	Canola	nucleus	25.79	35.33
CDX85711	Canola	plastid	19.22	34.96
VIT_05s0020g03670.t01	Wine grape	nucleus, plastid	24.57	34.59
Bra007780.1-P	Field mustard	nucleus	24.82	34.46
CDX83224	Canola	cytosol	27.25	34.36
Os01t0593200-01	Rice	nucleus	21.65	34.23
GSMUA_Achr7P09810_001	Banana	mitochondrion	34.06	33.73
AT2G25690.1	Thale cress	cytosol	26.28	33.33
EES00998	Sorghum	cytosol, plastid	21.65	32.84
Bra023326.1-P	Field mustard	plastid	17.76	32.02
Zm00001d044365_P001	Maize	cytosol	19.95	31.06
VIT_07s0151g00800.t01	Wine grape	mitochondrion, nucleus	22.14	31.06
Zm00001d039597_P001	Maize	cytosol	26.76	30.99
EES00181	Sorghum	cytosol, extracellular, nucleus	21.41	30.99
TraesCS3D01G215200.1	Wheat	nucleus	20.44	30.77
Os05t0180500-01	Rice	cytosol	24.33	30.58
HORVU3Hr1G051540.1	Barley	cytosol	20.19	30.4
TraesCS3D01G119500.1	Wheat	cytosol	26.28	30.25
AT5G11460.1	Thale cress	cytosol, plastid	25.3	30.23
TraesCS3B01G137000.1	Wheat	cytosol	25.79	30.11
TraesCS1B01G139200.1	Wheat	plastid	26.76	30.05
TraesCS3A01G212800.1	Wheat	nucleus	19.71	29.78
Os01t0719000-01	Rice	cytosol	18.98	29.77
TraesCS3A01G117700.1	Wheat	cytosol	25.55	29.75
TraesCS3B01G243000.2	Wheat	nucleus	22.38	29.21
Zm00001d008782_P001	Maize	nucleus	25.06	29.18
OQU77551	Sorghum	mitochondrion, plastid	25.55	28.3
TraesCS1D01G120700.1	Wheat	cytosol, extracellular, plastid	27.01	28.1
Zm00001d037713_P001	Maize	cytosol	21.41	26.83
TraesCS3B01G323700.2	Wheat	cytosol	17.52	26.67
TraesCS3D01G288800.1	Wheat	cytosol	17.03	26.02
GSMUA_Achr10P...	Banana	cytosol, mitochondrion	20.92	25.83
Zm00001d043612_P002	Maize	plastid	15.57	25.2
TraesCS3A01G289000.1	Wheat	cytosol	16.55	25.09
EES01375	Sorghum	plastid	15.57	24.33
TraesCS1A01G119800.1	Wheat	plastid	23.11	24.05
HORVU1Hr1G026780.1	Barley	cytosol, extracellular, plastid	20.92	23.96
HORVU3Hr1G068120.1	Barley	cytosol	15.09	23.85
HORVU3Hr1G021650.1	Barley	nucleus	20.19	18.86

Protein Annotations

EntrezGene:100247517	wikigene:100247517	MapMan:27.3.3	ProteinID:CCB46757	ProteinID:CCB46757.1	UniProt:F6H3G9
EMBL:FN595231	InterPro:IPR007650	EntrezGene:LOC100247517	wikigene:LOC100247517	PFAM:PF04570	PFscan:PS51795
PANTHER:PTHR33059	PANTHER:PTHR33059:SF15	TIGR:TC61785	UniParc:UPI0001982FFD	ArrayExpress:VIT_04s0008g04490	EnsemblPlantsGene:VIT_04s0008g04490
EnsemblPlants:VIT_04s0008g04490.t01	unigene:Vvi.16074	RefSeq:XP_002284674	RefSeq:XP_002284674.1	RefSeq:XP_010648586.1	InterPro:Zf-FLZ_dom
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr4:-:3865117..3868011

Molecular Weight (calculated)

45134.9 Da

IEP (calculated)

6.432

GRAVY (calculated)

-0.587

Length

411 amino acids

Sequence
(BLAST)

001: MLRKRSRSFQ KDQHMGHPTM ADAVSELYFQ SDVMGQKHKG NSFFSVPGLF VGLNYKGLSD SDSVRSPTSP LDFRVFSNLG SPFRSPRSSQ DGQHKSWDCS
101: KVGLSIIDSL DDGGKLSGKV LGSSESKTIL FGPQMRIKTP NSPSHINFFD GSKSLPKNYA SFPHTQIKSR PQKRDSDVVF EIEETPLEPE AFGRIRSCSL
201: DSSRSFSSLT NLTKRQSNLS SGNLCPGNMT TQVSSPPQIL GGNPNPDNFL PMKLNSIPAS VGSGQGLIGS LSASEIELSE DYTCVISHGP NPKTTHIYGD
301: CILECHSNDL ANHNKNDEHK IGSPLIVECS DNSTPYPSND FLSICYSCKK KLEEGKDIYM YRGEKAFCSL NCRSQEILID EEMEKTTDDS SEKSPVSKCG
401: EDLFETGMLA C

Best Arabidopsis Sequence Match ( AT2G25690.2 )
(BLAST)

001: MLKTRAMFPH KDQAMSLSLD PQSDLVVGHT NNRPITNPLA LSLLIGLNNK NKCISDSDFV RSPKSPLEFR VLSTMADSFF LRSPRSSLTA HLNCCCGPAA
101: KVGLSIVDSL GDDRCLLPDI VFGPALRIKC SEVMDKHPKL LFPVANKSKK IENERSGVVF EIGDNSSETE PVGLRNRSFS ANDCLRKTRV LSRSKLGQEG
201: DFPGSGSDNA FSSEDDMEDY TCIIAHGPNP KTTHIYGDRV LECHKNELKG DEDNKEKFGS VFPSDNFLGI CNFCNKKLGG GDDIYMYREK SFCSEECRSE
301: EMMIDEEDLE EPCIDMHESL KKLF

Arabidopsis Description

At2g25690 [Source:UniProtKB/TrEMBL;Acc:Q9SL94]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.