Factsheet for TraesCS1A01G119800.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
plastid 4
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, plastid
iPSORT:	secretory
MultiLoc:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU1Hr1G026780.1	Barley	cytosol, extracellular, plastid	68.86	75.77
TraesCS1B01G139200.1	Wheat	plastid	63.8	68.85
TraesCS1D01G120700.1	Wheat	cytosol, extracellular, plastid	60.25	60.25
Zm00001d037713_P001	Maize	cytosol	36.96	44.51
Os05t0180500-01	Rice	cytosol	36.71	44.34
OQU77551	Sorghum	mitochondrion, plastid	39.49	42.05
TraesCS3A01G117700.1	Wheat	cytosol	32.91	36.83
GSMUA_Achr7P13270_001	Banana	nucleus	26.33	28.49
GSMUA_AchrUn_...	Banana	nucleus	24.05	27.14
CDX69754	Canola	nucleus, plastid	18.48	26.55
Bra008960.1-P	Field mustard	nucleus, plastid	18.48	26.55
CDX97112	Canola	nucleus, plastid	18.23	26.28
TraesCS3A01G289000.1	Wheat	cytosol	17.97	26.2
Bra000551.1-P	Field mustard	cytosol, mitochondrion	15.7	24.31
CDY38508	Canola	cytosol	18.48	23.47
VIT_04s0008g04490.t01	Wine grape	nucleus	24.05	23.11
CDY11512	Canola	nucleus	17.22	22.67
Bra007780.1-P	Field mustard	nucleus	16.96	22.64
TraesCS3A01G212800.1	Wheat	nucleus	15.44	22.43
TraesCS4A01G295300.1	Wheat	plastid	16.96	22.41
CDX76742	Canola	nucleus	16.96	22.33
KRH09840	Soybean	plastid	22.28	22.17
KRH23481	Soybean	plastid	22.28	22.11
Bra023326.1-P	Field mustard	plastid	12.66	21.93
PGSC0003DMT400037607	Potato	nucleus	21.52	21.63
CDX83224	Canola	cytosol	17.72	21.47
Solyc08g067970.2.1	Tomato	nucleus	22.03	21.43
KRH52543	Soybean	nucleus	22.78	21.33
AT2G25690.1	Thale cress	cytosol	17.22	20.99
KRH16080	Soybean	nucleus	21.27	20.69
KRH05019	Soybean	nucleus	20.76	20.55
CDX85711	Canola	plastid	11.39	19.91
AT5G11460.1	Thale cress	cytosol, plastid	16.71	19.19
KRH61879	Soybean	extracellular	21.27	18.96

Protein Annotations

EnsemblPlants:TraesCS1A01G119800.1	EnsemblPlantsGene:TraesCS1A01G119800	InterPro:IPR007650	InterPro:Zf-FLZ_dom	PANTHER:PTHR33059	PANTHER:PTHR33059:SF12
PFAM:PF04570	PFscan:PS51795	SEG:seg	MapMan:27.3.3	:	:

Description

No Description!

Coordinates

chr1A:-:132133917..132135498

Molecular Weight (calculated)

41867.1 Da

IEP (calculated)

4.807

GRAVY (calculated)

-0.317

Length

395 amino acids

Sequence
(BLAST)

001: MRDCFLVSAA PIPCSLSLSD LSVSFSERRG GEGGRMMLRR VVSDQAAAGD ALDGAAAGRP RGPAFFAVPR LLVGLAAAKR GTPDCDSTAR SPKSPLEHRT
101: FPALGGSLLG SPRSPRSWDS QRVGLGGLVD TLAEPAADAK NRLLGFQMRP TKLQCLAKSY TSLPKDMPKD CGHAQPELRE VEAAAATAGS GGMSVPCTRF
201: YGDVKSGPEV VVSSGAQLGF SNHSVDRVKF PASGSLPVSI GGPRRYIGSV SAMEVEQSED YTCIIAHGSN PKTTRIFGDC ILEPCPVLMP DWESKEIDVD
301: KEGTELYWLV KGSPDADAAE DSTRFCSSCK KNLNGNESSI YRGENAFCGG NCRNQAVLNE EEDENNPAVS SPSSASSTSQ FDDDDIFIDE VVVLT

Best Arabidopsis Sequence Match ( AT5G11460.1 )
(BLAST)

001: MSQHSNYQMT TASDYYSTKP VLSAIRSHKL ISSVFEGKCP SDYESAWSPT SPLDFRLFST LGNPFAASSS RSIWRGKQRS WDSGKVGLSI VHSLVDDHHT
101: DSSATIVLPS PDSKNIIFGS LMRSGQKPHL LSQPFTKALM PKDVIPNAVF EIGHDVIDVL ELRKSGSVDA AYCSGAENFS VNNNACQVTK QDPGSLNGGT
201: ESDMEISEDY TCVISHGPNP KTTHFYGDQV MESVEREELK NRCCKNEKES IFAVAPLDLT TPVDVLPPKD FLSFCYGCSK KLGMGEDIYM YSGYKAFCSS
301: ECRSKEIDLD EEMEDGDEEE AIKSVSSSDK ESKKKSNGVF FTVG

Arabidopsis Description

At5g11460 [Source:UniProtKB/TrEMBL;Acc:Q9LYE4]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.