Factsheet for TraesCS1D01G120700.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, extracellular, cytosol

Predictor Summary:

extracellular 2
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
plastid 2
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, extracellular, plastid
Any Predictor:	cytosol, extracellular, plastid
iPSORT:	secretory
MultiLoc:	extracellular
PProwler:	plastid
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1B01G139200.1	Wheat	plastid	69.87	75.41
TraesCS1A01G119800.1	Wheat	plastid	60.25	60.25
HORVU1Hr1G026780.1	Barley	cytosol, extracellular, plastid	48.35	53.2
Zm00001d037713_P001	Maize	cytosol	35.19	42.38
Os05t0180500-01	Rice	cytosol	33.92	40.98
OQU77551	Sorghum	mitochondrion, plastid	35.44	37.74
TraesCS3D01G119500.1	Wheat	cytosol	29.11	32.21
GSMUA_Achr7P13270_001	Banana	nucleus	27.09	29.32
CDX69754	Canola	nucleus, plastid	19.49	28.0
Bra008960.1-P	Field mustard	nucleus, plastid	19.24	27.64
VIT_04s0008g04490.t01	Wine grape	nucleus	28.1	27.01
GSMUA_AchrUn_...	Banana	nucleus	23.8	26.86
TraesCS3D01G288800.1	Wheat	cytosol	18.23	26.77
CDX97112	Canola	nucleus, plastid	18.48	26.64
TraesCS4D01G016600.1	Wheat	mitochondrion	17.97	25.36
Solyc08g067970.2.1	Tomato	nucleus	25.82	25.12
PGSC0003DMT400037607	Potato	nucleus	24.81	24.94
KRH52543	Soybean	nucleus	26.33	24.64
TraesCS3D01G215200.1	Wheat	nucleus	16.96	24.54
CDY11512	Canola	nucleus	18.23	24.0
Bra007780.1-P	Field mustard	nucleus	17.97	23.99
CDX76742	Canola	nucleus	17.97	23.67
Bra000551.1-P	Field mustard	cytosol, mitochondrion	15.19	23.53
CDY38508	Canola	cytosol	18.48	23.47
CDX85711	Canola	plastid	13.16	23.01
KRH05019	Soybean	nucleus	22.53	22.31
KRH16080	Soybean	nucleus	22.53	21.92
KRH61879	Soybean	extracellular	24.3	21.67
KRH09840	Soybean	plastid	21.77	21.66
KRH23481	Soybean	plastid	21.77	21.61
CDX83224	Canola	cytosol	17.47	21.17
Bra023326.1-P	Field mustard	plastid	12.15	21.05
AT2G25690.1	Thale cress	cytosol	17.22	20.99
AT5G11460.1	Thale cress	cytosol, plastid	17.47	20.06

Protein Annotations

EnsemblPlants:TraesCS1D01G120700.1	EnsemblPlantsGene:TraesCS1D01G120700	InterPro:IPR007650	InterPro:Zf-FLZ_dom	PANTHER:PTHR33059	PANTHER:PTHR33059:SF12
PFAM:PF04570	PFscan:PS51795	SEG:seg	MapMan:27.3.3	:	:

Description

No Description!

Coordinates

chr1D:-:119404037..119405615

Molecular Weight (calculated)

41593.8 Da

IEP (calculated)

4.624

GRAVY (calculated)

-0.256

Length

395 amino acids

Sequence
(BLAST)

001: MRDCFLVSAA PIPCSLSLSD LLVSFSESRG GEGGRMMLRR VVSDQAAAGD ALDGAAAGRP RGPAFFAVPG LLVGLAAAKR GTPDCDSTAR SPKSPLEHRA
101: FPALGGSLLG SPRSPRSWDS QRVGLGGLVD TLAEPAADAK NRLLGFQMRP TKLQCLAKSY TSLPKDMPKD CGHAQPELGE VEAAAATAGS GGMSVPCTRF
201: YGDVKSGPEV IVSSGAQLGF SNHSVDRAKF PASGSLPVSI GGPRRYIGSV SAMEVEQSED YTCIIAHGSN PKTTRIFGDC ILEPCPVLMP DWESKEIDVD
301: KEGAELYWLV KGSPDADAAE DSTRFCSSCK KNLNVNESSI YRGENAFCGG NCRNQAVLNE EEDENNPAVS SPSSASSTSQ FDDDDIFIDE VVVLT

Best Arabidopsis Sequence Match ( AT5G11460.1 )
(BLAST)

001: MSQHSNYQMT TASDYYSTKP VLSAIRSHKL ISSVFEGKCP SDYESAWSPT SPLDFRLFST LGNPFAASSS RSIWRGKQRS WDSGKVGLSI VHSLVDDHHT
101: DSSATIVLPS PDSKNIIFGS LMRSGQKPHL LSQPFTKALM PKDVIPNAVF EIGHDVIDVL ELRKSGSVDA AYCSGAENFS VNNNACQVTK QDPGSLNGGT
201: ESDMEISEDY TCVISHGPNP KTTHFYGDQV MESVEREELK NRCCKNEKES IFAVAPLDLT TPVDVLPPKD FLSFCYGCSK KLGMGEDIYM YSGYKAFCSS
301: ECRSKEIDLD EEMEDGDEEE AIKSVSSSDK ESKKKSNGVF FTVG

Arabidopsis Description

At5g11460 [Source:UniProtKB/TrEMBL;Acc:Q9LYE4]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.