Factsheet for VIT_05s0020g03670.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 4
plastid 4
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400082082	Potato	nucleus, plastid	57.19	55.3
Solyc09g082210.2.1	Tomato	cytosol, plastid	52.74	52.38
KRG91310	Soybean	nucleus, plastid	47.6	51.67
KRH35505	Soybean	nucleus, plastid	45.55	50.0
KRH27651	Soybean	plastid	43.15	48.65
VIT_07s0151g00800.t01	Wine grape	mitochondrion, nucleus	48.63	48.46
KRH77839	Soybean	plastid	40.07	44.83
GSMUA_Achr1P14130_001	Banana	mitochondrion	42.47	43.36
GSMUA_Achr2P08850_001	Banana	plastid	43.15	42.28
GSMUA_Achr3P25470_001	Banana	mitochondrion	33.9	41.95
GSMUA_Achr8P20380_001	Banana	mitochondrion, nucleus	35.62	36.88
GSMUA_Achr9P25720_001	Banana	nucleus	40.07	35.67
Os03t0665200-01	Rice	nucleus	34.93	33.77
EER91113	Sorghum	mitochondrion	34.59	32.17
TraesCS4D01G016600.1	Wheat	mitochondrion	30.82	32.14
GSMUA_Achr4P22610_001	Banana	nucleus	41.1	31.91
GSMUA_Achr6P22030_001	Banana	cytosol	32.53	31.46
Zm00001d013595_P001	Maize	mitochondrion	33.56	30.43
TraesCS4A01G295300.1	Wheat	plastid	30.82	30.1
TraesCS4B01G018400.1	Wheat	plastid	30.14	28.95
GSMUA_Achr4P21250_001	Banana	nucleus	35.96	28.61
Zm00001d032937_P001	Maize	cytosol	27.05	28.01
EER94230	Sorghum	cytosol, endoplasmic reticulum, nucleus	25.0	25.98
CDX67936	Canola	nucleus, plastid	21.92	25.1
VIT_04s0008g04490.t01	Wine grape	nucleus	34.59	24.57
Bra003541.1-P	Field mustard	nucleus, plastid	23.29	24.46
Os10t0422600-01	Rice	endoplasmic reticulum	28.77	24.35
AT1G79970.1	Thale cress	nucleus, plastid	19.86	24.17
CDX79402	Canola	nucleus, plastid	22.26	23.38
HORVU4Hr1G002700.4	Barley	cytosol, golgi, mitochondrion	26.71	17.85
HORVU3Hr1G018540.1	Barley	extracellular	4.45	10.0

Protein Annotations

EntrezGene:100245904	wikigene:100245904	MapMan:27.3.3	ProteinID:CCB50435	ProteinID:CCB50435.1	UniProt:F6HDR4
EMBL:FN595749	InterPro:IPR007650	EntrezGene:LOC100245904	wikigene:LOC100245904	PFAM:PF04570	PFscan:PS51795
PANTHER:PTHR33059	PANTHER:PTHR33059:SF26	TIGR:TC53018	TIGR:TC69906	UniParc:UPI000210A401	ArrayExpress:VIT_05s0020g03670
EnsemblPlantsGene:VIT_05s0020g03670	EnsemblPlants:VIT_05s0020g03670.t01	unigene:Vvi.387	RefSeq:XP_002282784	RefSeq:XP_002282784.1	RefSeq:XP_019075365.1
InterPro:Zf-FLZ_dom	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr5:-:5386130..5388560

Molecular Weight (calculated)

32172.0 Da

IEP (calculated)

6.966

GRAVY (calculated)

-0.501

Length

292 amino acids

Sequence
(BLAST)

001: MADCGSLPSP TDKYRRPPSS SFFSSPRLFT GFSSKVFSET ETMMSPTSIL DSKPFSGFRN PFTNTTSTIK PSEPEPRRHW DKLDSRMIGL GIVDALTHDE
101: SDPKLSKPES RMVLFGSQLK IQIPPLPSSV LSPAESPKSP ADFGIKTRNS QLGPFSPCLS QSPAKKSGFG SANSGLEAPN SPRIFTGCLS ATEMELSEDY
201: TCVISHGPNP RTTHIFDNCI VGFSASRKEN DVFPESFLNF CHSCRKNIGQ GKDIYIYRGE KAFCSSECRQ REIMLEERME ILEGGDVYGT CS

Best Arabidopsis Sequence Match ( AT3G22550.1 )
(BLAST)

001: MLKKRSRSKQ ALMAETNQSQ NQKQSKTTPF PRLFTAFSSF KSFTENDAVA SPTSILDTKP FSVLKNPFGS DNPKTQEPET RLKLEPKRIG LAIVDSLIQD
101: ETPEPGPRSG TILFGSQLRI RVPDSPISSS DFGIKTRNSQ PETKKPGSES GLGSPRIISG YFPASDMELS EDYTCVTCHG PNPRTIHIFD NCIVESQPGV
201: VFFRSSDPVN ESDSDYSPPD SFLSCCCNCK KSLGPRDDIF MYRGDRAFCS SECRSIEMMM SEENDTK

Arabidopsis Description

NAD(P)H-quinone oxidoreductase subunit, putative (DUF581) [Source:UniProtKB/TrEMBL;Acc:Q8L471]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.