Factsheet for TraesCS4B01G018400.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G350500.1
TraesCS1B01G364800.1
TraesCS1D01G353300.1
TraesCS3A01G282800.1
TraesCS3B01G316500.1
TraesCS3D01G282800.1
TraesCS5A01G095100.1
TraesCS5A01G149200.2
TraesCS5A01G154700.1
TraesCS5A01G239600.1
TraesCS5A01G243900.1
TraesCS5B01G101300.1
TraesCS5B01G147900.4
TraesCS5B01G152900.1
TraesCS5B01G241900.1
TraesCS5D01G107800.1
TraesCS5D01G143600.3
TraesCS5D01G159600.1
TraesCS5D01G250600.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G63210.1	TraesCS5A01G239600.1	AT2G31985.1	21798944
AT3G63210.1	TraesCS5A01G243900.1	AT2G31985.1	21798944
AT3G63210.1	TraesCS5B01G241900.1	AT2G31985.1	21798944
AT3G63210.1	TraesCS5D01G250600.1	AT2G31985.1	21798944
AT3G63210.1	TraesCS5A01G154700.1	AT2G38270.1	21798944
AT3G63210.1	TraesCS5B01G152900.1	AT2G38270.1	21798944
AT3G63210.1	TraesCS5D01G159600.1	AT2G38270.1	21798944
AT3G63210.1	TraesCS5A01G149200.2	AT3G08850.1	21798944
AT3G63210.1	TraesCS5B01G147900.4	AT3G08850.1	21798944
AT3G63210.1	TraesCS5D01G143600.3	AT3G08850.1	21798944
AT3G63210.1	TraesCS1A01G350500.1	AT3G29160.1	21798944
AT3G63210.1	TraesCS1B01G364800.1	AT3G29160.1	21798944
AT3G63210.1	TraesCS1D01G353300.1	AT3G29160.1	21798944
AT3G63210.1	TraesCS3A01G282800.1	AT3G29160.1	21798944
AT3G63210.1	TraesCS3B01G316500.1	AT3G29160.1	21798944
AT3G63210.1	TraesCS3D01G282800.1	AT3G29160.1	21798944
AT3G63210.1	TraesCS5A01G095100.1	AT5G11980.1	21798944
AT3G63210.1	TraesCS5B01G101300.1	AT5G11980.1	21798944
AT3G63210.1	TraesCS5D01G107800.1	AT5G11980.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4D01G016600.1	Wheat	mitochondrion	79.93	86.79
TraesCS4A01G295300.1	Wheat	plastid	78.95	80.27
Os03t0665200-01	Rice	nucleus	66.45	66.89
EER91113	Sorghum	mitochondrion	61.18	59.24
Zm00001d013595_P001	Maize	mitochondrion	58.55	55.28
HORVU4Hr1G002700.4	Barley	cytosol, golgi, mitochondrion	55.92	38.9
CDY24316	Canola	mitochondrion, plastid	24.34	33.95
CDX92948	Canola	mitochondrion	29.28	33.71
Bra001873.1-P	Field mustard	mitochondrion	28.95	33.33
CDY65610	Canola	mitochondrion, nucleus	29.28	33.21
Bra023820.1-P	Field mustard	mitochondrion	28.29	32.82
VIT_07s0151g00800.t01	Wine grape	mitochondrion, nucleus	31.25	32.42
AT3G22550.1	Thale cress	mitochondrion	28.29	32.21
Bra039962.1-P	Field mustard	mitochondrion, nucleus	28.29	32.09
CDY34246	Canola	mitochondrion	27.63	32.06
CDX98213	Canola	mitochondrion	27.3	31.68
KRH35505	Soybean	nucleus, plastid	26.97	30.83
KRG91310	Soybean	nucleus, plastid	26.97	30.48
VIT_05s0020g03670.t01	Wine grape	nucleus, plastid	28.95	30.14
KRH71405	Soybean	mitochondrion, nucleus	25.66	29.66
KRH27651	Soybean	plastid	25.0	29.34
Solyc09g082210.2.1	Tomato	cytosol, plastid	28.29	29.25
Solyc09g065390.1.1	Tomato	mitochondrion	17.43	28.8
KRH32034	Soybean	mitochondrion	25.33	28.52
PGSC0003DMT400082082	Potato	nucleus, plastid	28.29	28.48
Bra007736.1-P	Field mustard	plastid	21.71	28.33
CDX93919	Canola	nucleus	22.04	28.03
CDY56452	Canola	plastid	21.38	27.54
CDX76690	Canola	plastid	21.05	27.35
KRH67235	Soybean	mitochondrion, nucleus	25.33	27.21
GSMUA_Achr4P22610_001	Banana	nucleus	33.55	27.13
KRH77839	Soybean	plastid	23.03	26.82
AT3G63210.1	Thale cress	mitochondrion, plastid	23.03	26.62
KRG95554	Soybean	mitochondrion, nucleus	23.03	24.73
GSMUA_Achr4P21250_001	Banana	nucleus	29.28	24.25
TraesCS3B01G323700.2	Wheat	cytosol	20.39	22.96
TraesCS3B01G137000.1	Wheat	cytosol	25.0	21.59
TraesCS3B01G243000.2	Wheat	nucleus	21.71	20.95
CDX67936	Canola	nucleus, plastid	16.78	20.0
TraesCS1B01G139200.1	Wheat	plastid	23.68	19.67
AT1G79970.1	Thale cress	nucleus, plastid	15.13	19.17
CDY53722	Canola	extracellular, vacuole	23.03	19.13
CDX79402	Canola	nucleus, plastid	17.11	18.7
Bra003541.1-P	Field mustard	nucleus, plastid	17.11	18.7
Bra040437.1-P	Field mustard	mitochondrion, plastid	23.03	17.54
Solyc06g009000.1.1	Tomato	plastid	14.47	15.28
PGSC0003DMT400037957	Potato	plastid	14.47	15.02

Protein Annotations

EnsemblPlants:TraesCS4B01G018400.1	EnsemblPlantsGene:TraesCS4B01G018400	InterPro:IPR007650	InterPro:Zf-FLZ_dom	PANTHER:PTHR33059	PANTHER:PTHR33059:SF65
PFAM:PF04570	PFscan:PS51795	SEG:seg	MapMan:27.3.3	:	:

Description

No Description!

Coordinates

chr4B:-:13299816..13301974

Molecular Weight (calculated)

31718.6 Da

IEP (calculated)

7.398

GRAVY (calculated)

-0.225

Length

304 amino acids

Sequence
(BLAST)

001: MVGPWSWPAC STGAPSVRPP EGMLRNRSRR AVGAGGGGGG GLMPQPEPLA AAAAQSSSTS PTPYMALPQA GFLDGAEQGP SSSMSPTSIL ETKHFCCSAL
101: PPFLSERSLR KAHMEMAAPE PASVGLADVL REHGGAKAGG RKVVFGSQLR IQVPSGRAAE LVSSPIEFGV KNRDAVLSPA RRFLPEVVSS PTARVFAAGV
201: APGEAAMSED YTCVISRGPN PRTRHIFDDC IVESCGDALV DKADSGPGGD AVPASGSLSS CHACRRQLAG HANDTFIHRG GRAFCSDECR YREMIFDEAV
301: DNLR

Best Arabidopsis Sequence Match ( AT3G22550.1 )
(BLAST)

001: MLKKRSRSKQ ALMAETNQSQ NQKQSKTTPF PRLFTAFSSF KSFTENDAVA SPTSILDTKP FSVLKNPFGS DNPKTQEPET RLKLEPKRIG LAIVDSLIQD
101: ETPEPGPRSG TILFGSQLRI RVPDSPISSS DFGIKTRNSQ PETKKPGSES GLGSPRIISG YFPASDMELS EDYTCVTCHG PNPRTIHIFD NCIVESQPGV
201: VFFRSSDPVN ESDSDYSPPD SFLSCCCNCK KSLGPRDDIF MYRGDRAFCS SECRSIEMMM SEENDTK

Arabidopsis Description

NAD(P)H-quinone oxidoreductase subunit, putative (DUF581) [Source:UniProtKB/TrEMBL;Acc:Q8L471]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.