CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 2
plastid 5
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX70438
CDX78461
CDX85250
CDX86386
CDX91181
CDY00652
CDY04058
CDY07744
CDY14473
CDY27967
CDY44405
CDY64943
CDY66704
CDY67456
CDY67814
CDY68306

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G63210.1	CDY66704	AT2G31985.1	21798944
AT3G63210.1	CDY68306	AT2G31985.1	21798944
AT3G63210.1	CDY07744	AT2G38270.1	21798944
AT3G63210.1	CDY14473	AT2G38270.1	21798944
AT3G63210.1	CDY00652	AT3G08850.1	21798944
AT3G63210.1	CDY27967	AT3G08850.1	21798944
AT3G63210.1	CDY64943	AT3G08850.1	21798944
AT3G63210.1	CDY67456	AT3G08850.1	21798944
AT3G63210.1	CDX85250	AT3G29160.1	21798944
AT3G63210.1	CDX86386	AT3G29160.1	21798944
AT3G63210.1	CDY04058	AT3G29160.1	21798944
AT3G63210.1	CDY44405	AT3G29160.1	21798944
AT3G63210.1	CDX70438	AT5G11980.1	21798944
AT3G63210.1	CDX78461	AT5G11980.1	21798944
AT3G63210.1	CDX91181	AT5G11980.1	21798944
AT3G63210.1	CDY67814	AT5G11980.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra007736.1-P	Field mustard	plastid	87.29	88.41
CDX76690	Canola	plastid	83.05	83.76
CDX93919	Canola	nucleus	61.86	61.09
AT3G63210.1	Thale cress	mitochondrion, plastid	57.63	51.71
CDY53722	Canola	extracellular, vacuole	62.29	40.16
CDY24316	Canola	mitochondrion, plastid	28.39	30.73
GSMUA_Achr3P25470_001	Banana	mitochondrion	30.51	30.51
CDX98213	Canola	mitochondrion	32.2	29.01
CDX92948	Canola	mitochondrion	31.78	28.41
GSMUA_Achr1P14130_001	Banana	mitochondrion	33.9	27.97
CDY34246	Canola	mitochondrion	30.93	27.86
Os03t0665200-01	Rice	nucleus	35.17	27.48
CDY65610	Canola	mitochondrion, nucleus	30.51	26.87
GSMUA_Achr8P20380_001	Banana	mitochondrion, nucleus	30.93	25.89
EER91113	Sorghum	mitochondrion	33.05	24.84
GSMUA_Achr2P08850_001	Banana	plastid	31.36	24.83
Zm00001d013595_P001	Maize	mitochondrion	33.47	24.53
GSMUA_Achr9P25720_001	Banana	nucleus	33.9	24.39
Zm00001d032937_P001	Maize	cytosol	28.81	24.11
CDX85711	Canola	plastid	22.88	23.89
TraesCS4D01G016600.1	Wheat	mitochondrion	27.97	23.57
CDX69754	Canola	nucleus, plastid	26.27	22.55
TraesCS4A01G295300.1	Wheat	plastid	28.39	22.41
CDX76742	Canola	nucleus	28.39	22.33
CDY11512	Canola	nucleus	27.97	22.0
GSMUA_Achr6P22030_001	Banana	cytosol	27.97	21.85
TraesCS4B01G018400.1	Wheat	plastid	27.54	21.38
EER94230	Sorghum	cytosol, endoplasmic reticulum, nucleus	25.42	21.35
CDX97112	Canola	nucleus, plastid	24.15	20.8
Os10t0422600-01	Rice	endoplasmic reticulum	30.08	20.58
CDY38508	Canola	cytosol	27.12	20.58
GSMUA_Achr4P22610_001	Banana	nucleus	31.36	19.68
CDX83224	Canola	cytosol	26.69	19.33
GSMUA_Achr4P21250_001	Banana	nucleus	29.66	19.07
CDX67936	Canola	nucleus, plastid	18.64	17.25
CDX79402	Canola	nucleus, plastid	18.22	15.47
HORVU4Hr1G002700.4	Barley	cytosol, golgi, mitochondrion	20.34	10.98
HORVU3Hr1G018540.1	Barley	extracellular	4.66	8.46

Protein Annotations

EnsemblPlants:CDY56452	EnsemblPlantsGene:GSBRNA2T00019602001	InterPro:IPR007650	InterPro:Zf-FLZ_dom	PANTHER:PTHR33059	PANTHER:PTHR33059:SF11
PFAM:PF04570	PFscan:PS51795	ProteinID:CDY56452	ProteinID:CDY56452.1	SEG:seg	UniParc:UPI0004EF18ED
UniProt:A0A078J2P6	MapMan:27.3.3	:	:	:	:

Description

BnaA09g55700DBnaA09g55700D protein [Source:UniProtKB/TrEMBL;Acc:A0A078J2P6]

Coordinates

chrLK033491:+:26544..27611

Molecular Weight (calculated)

26139.0 Da

IEP (calculated)

7.038

GRAVY (calculated)

-0.339

Length

236 amino acids

Sequence
(BLAST)

001: MADQLPSPTP NTYYSSVFTS PKFRFFSSNI TPFDSIISPT STLEANHSHP SISSSSINPR PASCYEPTLI PKPQRFLHPP EAFGLADLVK SKDRSSKPVN
101: KMVLFGSKLR VQIPSADFGT KSAATCTSPC LKTKVLTVSE VDQTEDYTRV ISHGPNPTIT HIFDNSVIVE ATPPCSVPLP QVPVESLETK ANFLSCCYTC
201: NKNLDQKHDI YIYRGEKGFC SCECRYQEML LDQMEG

Best Arabidopsis Sequence Match ( AT3G63210.1 )
(BLAST)

001: MLRNKPRAAV TTKKQTSLLM ADQPPPPKPN TCHCSPSLFS SPKFRFFTSK MMMTPFDSDF SLVSPTSILE ANPSIFSSKN PKPVSYFEPT IPNPQRFHSP
101: DVFGLADLVK DGDSNRDHSR KPVNKMVLFG SKLRVQIPSS ADFGTKTGIR YPPCQLSPCV QTKVLAVSEI DQTEDYTRVI SHGPNPTITH IFDNSVFVEA
201: TPCSVPLPQP AMETKSTESF LSRCFTCKKN LDQKQDIYIY RGEKGFCSSE CRYQEMLLDQ MET

Arabidopsis Description

MARD1Protein MARD1 [Source:UniProtKB/Swiss-Prot;Acc:Q8LGS1]
SUBAcon: [mitochondrion,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.