CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol
BaCelLo:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX99847
CDY26320

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G31985.1	CDX99847	AT1G29680.1	21798944
AT2G31985.1	CDY26320	AT1G29680.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra021765.1-P	Field mustard	cytosol	99.59	99.59
CDY68306	Canola	cytosol	99.59	99.59
AT2G31985.1	Thale cress	cytosol	91.29	91.29
CDY10117	Canola	cytosol	82.57	82.57
CDY47277	Canola	cytosol	79.25	79.25
TraesCS5A01G239600.1	Wheat	cytosol	61.83	66.82
TraesCS5D01G250600.1	Wheat	cytosol	65.15	66.53
TraesCS5B01G241900.1	Wheat	cytosol	64.73	66.1
TraesCS5A01G243900.1	Wheat	cytosol	64.73	66.1
Solyc09g098120.2.1	Tomato	cytosol	65.15	65.97
PGSC0003DMT400016814	Potato	cytosol	64.73	65.55
VIT_05s0062g00810.t01	Wine grape	cytosol	63.07	65.24
EES05730	Sorghum	cytosol	63.49	64.29
Zm00001d051459_P001	Maize	cytosol	62.66	63.45
KRH31541	Soybean	nucleus	60.17	61.97
GSMUA_AchrUn_...	Banana	cytosol	58.09	59.83
HORVU5Hr1G069360.3	Barley	cytosol	55.19	51.95
Os05t0569500-01	Rice	cytosol, plastid	53.53	50.19
HORVU7Hr1G074020.2	Barley	cytosol	45.23	47.39
CDY59324	Canola	cytosol	34.85	34.15
CDX99410	Canola	cytosol	34.85	34.01
CDY26320	Canola	cytosol	32.78	33.91
CDY39441	Canola	cytosol	34.02	33.33
CDX99847	Canola	cytosol	32.37	32.91
CDY01566	Canola	cytosol	8.71	23.86
CDX78906	Canola	cytosol	34.02	16.91

Protein Annotations

EnsemblPlants:CDY66704	EnsemblPlantsGene:GSBRNA2T00055607001	InterPro:OBAP-like	PANTHER:PTHR31360	PANTHER:PTHR31360:SF0	PFAM:PF06884
ProteinID:CDY66704	ProteinID:CDY66704.1	SEG:seg	UniParc:UPI0004EBA56D	UniProt:A0A078JJ04	MapMan:35.1

Description

BnaCnng52000DBnaCnng52000D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JJ04]

Coordinates

chrLK035418:-:10811..12545

Molecular Weight (calculated)

27042.4 Da

IEP (calculated)

6.035

GRAVY (calculated)

-0.303

Length

241 amino acids

Sequence
(BLAST)

001: MEKAVHSSTT PGPEVPGEAT KTGTSIVDTA TSAVQSFAPV NQIHQHLCAF HFYSYDMTRQ VEAHHFCSHV NEDMRQCLIY DGPDANARLI GLEYIVTEKL
101: FMTLPDEEKK LWHTHEWEVK GGFLFMPGVP GPIQRQDLDK VAKTYGKVFH FWQVDLGHDL PIGLPNVMMA VTRDGQLFHE MIQETEKRFG VSIEGEREAR
201: AYMSGPELGI HPLANGGGKG LKLELREVDI KPVESVARVF V

Best Arabidopsis Sequence Match ( AT2G31985.1 )
(BLAST)

001: MEKAVHSSTT SGPAVPGETT KTGTSIIDTA ASAVQSFAPV NQIHQHLCAF HFYADDMARQ VEAHHFCSHV NEEMRQCLIY DGPDANARLI GLEYIVSEKL
101: FMTLPDEEKK LWHSHEWEVK GGFLFMPGVP GAIQRKDLDK VAKTYGKVFH FWQVDLGHEL PIGLPNVMMA VTRDGQLFHE MIQEAEKRFG VSVEGERDSR
201: AYMSGPELGI HPLANGGGKG MKLELREVDI KPVESVGSVF V

Arabidopsis Description

OBAP1BOil body-associated protein 1B [Source:UniProtKB/Swiss-Prot;Acc:Q8GWR2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.