Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 4
- nucleus 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| VIT_10s0003g02040.t01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G05510.1 | VIT_10s0003g02040.t01 | AT1G29680.1 | 21798944 |
| AT2G31985.1 | VIT_10s0003g02040.t01 | AT1G29680.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400016814 | Potato | cytosol | 77.25 | 75.63 |
| Solyc09g098120.2.1 | Tomato | cytosol | 76.39 | 74.79 |
| TraesCS5D01G250600.1 | Wheat | cytosol | 71.24 | 70.34 |
| GSMUA_AchrUn_... | Banana | cytosol | 70.39 | 70.09 |
| TraesCS5B01G241900.1 | Wheat | cytosol | 70.82 | 69.92 |
| TraesCS5A01G239600.1 | Wheat | cytosol | 66.09 | 69.06 |
| TraesCS5A01G243900.1 | Wheat | cytosol | 69.53 | 68.64 |
| EES05730 | Sorghum | cytosol | 69.96 | 68.49 |
| Zm00001d051459_P001 | Maize | cytosol | 69.96 | 68.49 |
| AT1G05510.1 | Thale cress | cytosol | 70.39 | 68.05 |
| CDY10117 | Canola | cytosol | 68.67 | 66.39 |
| CDY47277 | Canola | cytosol | 68.24 | 65.98 |
| Bra015432.1-P | Field mustard | cytosol | 68.24 | 65.98 |
| KRH31541 | Soybean | nucleus | 64.38 | 64.1 |
| CDY68306 | Canola | cytosol | 65.24 | 63.07 |
| CDY66704 | Canola | cytosol | 65.24 | 63.07 |
| Bra021765.1-P | Field mustard | cytosol | 65.24 | 63.07 |
| AT2G31985.1 | Thale cress | cytosol | 63.95 | 61.83 |
| Os05t0569500-01 | Rice | cytosol, plastid | 61.37 | 55.64 |
| HORVU5Hr1G069360.3 | Barley | cytosol | 60.94 | 55.47 |
| HORVU7Hr1G074020.2 | Barley | cytosol | 50.21 | 50.87 |
| VIT_10s0003g02040.t01 | Wine grape | cytosol | 35.19 | 33.47 |
Protein Annotations
| ArrayExpress:VIT_05s0062g00810 | EMBL:FN596745 | EnsemblPlants:VIT_05s0062g00810.t01 | EnsemblPlantsGene:VIT_05s0062g00810 | EntrezGene:100249843 | EntrezGene:LOC100249843 |
| InterPro:OBAP-like | PANTHER:PTHR31360 | PANTHER:PTHR31360:SF0 | PFAM:PF06884 | ProteinID:CBI39418 | ProteinID:CBI39418.3 |
| RefSeq:XP_002264227 | RefSeq:XP_002264227.1 | SEG:seg | TIGR:TC57394 | unigene:Vvi.1882 | UniParc:UPI00015CBE96 |
| UniProt:D7U9K4 | wikigene:100249843 | wikigene:LOC100249843 | MapMan:35.1 | : | : |
Description
No Description!
Coordinates
chr5:-:19111223..19112431
Molecular Weight (calculated)
26533.9 Da
IEP (calculated)
6.387
GRAVY (calculated)
-0.454
Length
233 amino acids
Sequence
(BLAST)
(BLAST)
001: MSTHPEVPGE PTHTTTALLE TATSAIQGFG PINKIHQHLC AFHFYGHDMT RQVEAHHFCA HQNEEMRQCL IYDGPEADAK LIGLEYIISE NLFMTLPDME
101: KPLWHSHEFE VKSGVLFMPR MPALVERQDL EKVCKTYGKT IHFWQVDRGD NLPLGLPQIM MALSRDGQLD EKLARDCEKR FGVIFDKERE NRAYMKGPEH
201: GIHPLANGAG TGLQTKLREV DCKPTESVPR VFV
101: KPLWHSHEFE VKSGVLFMPR MPALVERQDL EKVCKTYGKT IHFWQVDRGD NLPLGLPQIM MALSRDGQLD EKLARDCEKR FGVIFDKERE NRAYMKGPEH
201: GIHPLANGAG TGLQTKLREV DCKPTESVPR VFV
001: MEKAVHLSTK NGPKVPGEPT KTGTSMVDTA ASAVQSFAPI NQIHQHLCAF HFYAYDMTRQ VEAHHFCGHI NEDMRQCLIY DGPDANARLI GLEYIVTEKL
101: FMTLPDDEKK LWHTHEWEVK GGFLFMPGVP EAIQRQDLEK VAKTYGKVYH FWQVDLGHQL PIGLPNIMMA VTRDGQLYPE MIKETEKQFG VSIDKERESR
201: AYMKGPDHGI HPLANGGGKG LKLELREVDI KPVESVPRVF V
101: FMTLPDDEKK LWHTHEWEVK GGFLFMPGVP EAIQRQDLEK VAKTYGKVYH FWQVDLGHQL PIGLPNIMMA VTRDGQLYPE MIKETEKQFG VSIDKERESR
201: AYMKGPDHGI HPLANGGGKG LKLELREVDI KPVESVPRVF V
Arabidopsis Description
OBAP1AOil body-associated protein 1A [Source:UniProtKB/Swiss-Prot;Acc:Q9ZVY7]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.