CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol
BaCelLo:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX99847
CDY26320

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G05510.1	CDX99847	AT1G29680.1	21798944
AT1G05510.1	CDY26320	AT1G29680.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY47277	Canola	cytosol	94.61	94.61
AT1G05510.1	Thale cress	cytosol	94.19	94.19
CDY68306	Canola	cytosol	82.99	82.99
CDY66704	Canola	cytosol	82.57	82.57
Solyc09g098120.2.1	Tomato	cytosol	68.46	69.33
VIT_05s0062g00810.t01	Wine grape	cytosol	66.39	68.67
PGSC0003DMT400016814	Potato	cytosol	67.63	68.49
TraesCS5A01G239600.1	Wheat	cytosol	59.75	64.57
TraesCS5D01G250600.1	Wheat	cytosol	63.07	64.41
TraesCS5A01G243900.1	Wheat	cytosol	63.07	64.41
GSMUA_AchrUn_...	Banana	cytosol	62.24	64.1
TraesCS5B01G241900.1	Wheat	cytosol	62.66	63.98
EES05730	Sorghum	cytosol	62.24	63.03
Zm00001d051459_P001	Maize	cytosol	61.41	62.18
KRH31541	Soybean	nucleus	59.75	61.54
Os05t0569500-01	Rice	cytosol, plastid	55.6	52.14
HORVU5Hr1G069360.3	Barley	cytosol	51.87	48.83
HORVU7Hr1G074020.2	Barley	cytosol	46.06	48.26
CDY59324	Canola	cytosol	38.17	37.4
CDY26320	Canola	cytosol	35.68	36.91
CDX99410	Canola	cytosol	37.76	36.84
CDY39441	Canola	cytosol	37.34	36.59
CDX99847	Canola	cytosol	35.27	35.87
CDY01566	Canola	cytosol	9.54	26.14
CDX78906	Canola	cytosol	36.93	18.35

Protein Annotations

EnsemblPlants:CDY10117	EnsemblPlantsGene:GSBRNA2T00031922001	InterPro:OBAP-like	PANTHER:PTHR31360	PANTHER:PTHR31360:SF0	PFAM:PF06884
ProteinID:CDY10117	ProteinID:CDY10117.1	UniParc:UPI0004EEF89B	UniProt:A0A078FAS4	MapMan:35.1	:

Description

BnaC05g03600DBnaC05g03600D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FAS4]

Coordinates

chrLK032001:+:106075..107349

Molecular Weight (calculated)

27254.9 Da

IEP (calculated)

6.317

GRAVY (calculated)

-0.377

Length

241 amino acids

Sequence
(BLAST)

001: MEKAVHLSTK AGPEVPGEPT KMGTSMVDSA AAAVQSFTPI NQIHQHLCAF HFYAYDMTRQ VEAHHFCGHI NEDMRQCLIY DGPDANARLI GLEYIVSEKL
101: FMTLPDDEKK LWHTHEWEVK GGFLFMPGVP EPIQRQDLEK VAKTYGKVYH FWQVDLGHEL PIGLPNIMMA VTRDGQLYPE MVKETEKKFG ISIDKERESR
201: AYMTGPDHGI HPLANGGGKG LKLEVREVDI KPVESVPRVF V

Best Arabidopsis Sequence Match ( AT1G05510.1 )
(BLAST)

001: MEKAVHLSTK NGPKVPGEPT KTGTSMVDTA ASAVQSFAPI NQIHQHLCAF HFYAYDMTRQ VEAHHFCGHI NEDMRQCLIY DGPDANARLI GLEYIVTEKL
101: FMTLPDDEKK LWHTHEWEVK GGFLFMPGVP EAIQRQDLEK VAKTYGKVYH FWQVDLGHQL PIGLPNIMMA VTRDGQLYPE MIKETEKQFG VSIDKERESR
201: AYMKGPDHGI HPLANGGGKG LKLELREVDI KPVESVPRVF V

Arabidopsis Description

OBAP1AOil body-associated protein 1A [Source:UniProtKB/Swiss-Prot;Acc:Q9ZVY7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.