CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT4G18920.1	Thale cress	cytosol	91.5	91.5
CDY59324	Canola	cytosol	72.87	73.17
CDY39441	Canola	cytosol	72.87	73.17
VIT_10s0003g02040.t01	Wine grape	cytosol	61.54	62.04
CDY01566	Canola	cytosol	21.86	61.36
Solyc03g005940.2.1	Tomato	cytosol	55.87	57.98
TraesCS3D01G272000.1	Wheat	cytosol	57.89	57.66
KRH21156	Soybean	nucleus	57.09	57.55
Solyc02g071760.2.1	Tomato	extracellular	55.87	57.5
TraesCS3B01G306300.1	Wheat	cytosol	57.49	57.26
HORVU3Hr1G071490.2	Barley	cytosol	57.09	56.85
PGSC0003DMT400073143	Potato	cytosol	55.06	56.67
TraesCS3A01G272700.1	Wheat	cytosol	56.28	56.05
EES03609	Sorghum	cytosol	55.47	55.24
CDY26320	Canola	cytosol	51.42	54.51
CDX99847	Canola	cytosol	52.23	54.43
EES03555	Sorghum	plastid	54.66	54.0
Zm00001d043464_P001	Maize	plastid	55.06	53.97
Os01t0728700-01	Rice	plastid	54.25	53.6
Zm00001d011755_P001	Maize	plastid	54.25	53.6
KRH11089	Soybean	plasma membrane	40.89	53.44
TraesCS3D01G283100.1	Wheat	plastid	53.04	52.4
TraesCS3B01G316800.1	Wheat	plastid	52.63	52.0
TraesCS3A01G283100.1	Wheat	plastid	51.82	51.2
HORVU3Hr1G069140.1	Barley	cytosol	53.44	51.16
Bra013362.1-P	Field mustard	cytosol	97.57	49.9
CDX78906	Canola	cytosol	97.57	49.69
GSMUA_Achr9P05700_001	Banana	nucleus	36.84	38.56
CDY47277	Canola	cytosol	36.84	37.76
CDY10117	Canola	cytosol	36.84	37.76
CDY66704	Canola	cytosol	34.01	34.85
CDY68306	Canola	cytosol	33.6	34.44

Protein Annotations

EnsemblPlants:CDX99410	EnsemblPlantsGene:GSBRNA2T00107736001	InterPro:OBAP-like	PANTHER:PTHR31360	PANTHER:PTHR31360:SF1	PFAM:PF06884
ProteinID:CDX99410	ProteinID:CDX99410.1	UniParc:UPI0004EE9E8A	MapMan:35.1	:	:

Description

BnaC01g11420D

Coordinates

chrLK031910:-:523267..524451

Molecular Weight (calculated)

27798.5 Da

IEP (calculated)

7.531

GRAVY (calculated)

-0.455

Length

247 amino acids

Sequence
(BLAST)

001: MASNDKVPVA CPASTGEGKE PMGDPTKTTT AMLDKGTAMF QSMKPIKQMS LHVCSFACYS HDPGRQIEVH MYGHRVNQDF LQCAVYDSNS AKAHLIGIEY
101: IVSEKLFESL SPDEQKLWHS HDYEIQMALL VTPRVPELVA KPELKNLAKS YGKFWCTWQI DRGDRLPLGT PSLMVSPQDV SLGRIKPELV KKRDEEHGIS
201: TESLKPSREG ICGPEKKNLI ADYWVRFRKG FAIDVVETDM KRTAPFP

Best Arabidopsis Sequence Match ( AT4G18920.1 )
(BLAST)

001: MASSDKVPVA CPASSGDGKE PMGNPTKTTT AMLEKGTAMM QSMKPIRQMS LHVCSFACYS HDPGRQIEVH IYGHRVNQDF LQCAVYDSNS SKAHLIGIEY
101: IVSEKLFESL SPEEQKLWHS HDYEIQMALL VTPRVPELVA KPELKNLAKS YGKFWCTWQI DRGDKLPLGV PSLMVSPQDV NLGRIKPELV KKRDEEHGIS
201: TESLKPSRDG ICGPEKKNLV ADYWVRFRKG FALDVVETDM KRTAPFP

Arabidopsis Description

OBAP2BOil body-associated protein 2B [Source:UniProtKB/Swiss-Prot;Acc:Q1PE68]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.