Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 3
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| HORVU5Hr1G069360.3 | |
| HORVU6Hr1G075650.1 | |
| HORVU7Hr1G038130.1 | |
| HORVU7Hr1G074020.2 |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3B01G306300.1 | Wheat | cytosol | 97.58 | 97.58 |
| TraesCS3D01G272000.1 | Wheat | cytosol | 97.18 | 97.18 |
| TraesCS3A01G272700.1 | Wheat | cytosol | 93.55 | 93.55 |
| Zm00001d043464_P001 | Maize | plastid | 79.84 | 78.57 |
| EES03609 | Sorghum | cytosol | 77.82 | 77.82 |
| VIT_10s0003g02040.t01 | Wine grape | cytosol | 62.5 | 63.27 |
| HORVU3Hr1G069140.1 | Barley | cytosol | 64.92 | 62.4 |
| PGSC0003DMT400073145 | Potato | nucleus | 38.71 | 61.54 |
| Solyc02g071770.2.1 | Tomato | cytosol | 59.68 | 60.16 |
| Solyc03g005940.2.1 | Tomato | cytosol | 56.85 | 59.24 |
| PGSC0003DMT400073143 | Potato | cytosol | 57.26 | 59.17 |
| Solyc02g071760.2.1 | Tomato | extracellular | 56.45 | 58.33 |
| Bra025063.1-P | Field mustard | cytosol | 57.26 | 57.72 |
| CDY39441 | Canola | cytosol | 57.26 | 57.72 |
| CDY59324 | Canola | cytosol | 57.26 | 57.72 |
| CDX99410 | Canola | cytosol | 56.85 | 57.09 |
| KRH21156 | Soybean | nucleus | 56.05 | 56.73 |
| AT4G18920.1 | Thale cress | cytosol | 55.65 | 55.87 |
| AT5G45690.1 | Thale cress | nucleus | 55.65 | 55.87 |
| KRH11089 | Soybean | plasma membrane | 40.73 | 53.44 |
| Bra012566.1-P | Field mustard | cytosol | 46.37 | 51.34 |
| CDY26320 | Canola | cytosol | 47.58 | 50.64 |
| CDX99847 | Canola | cytosol | 47.98 | 50.21 |
| AT1G29680.1 | Thale cress | cytosol | 47.58 | 49.79 |
| Bra032330.1-P | Field mustard | cytosol | 47.58 | 49.79 |
| PGSC0003DMT400073144 | Potato | cytosol | 19.76 | 46.67 |
| GSMUA_Achr9P05700_001 | Banana | nucleus | 42.74 | 44.92 |
| CDY01566 | Canola | cytosol | 13.71 | 38.64 |
| HORVU7Hr1G074020.2 | Barley | cytosol | 33.06 | 35.65 |
| HORVU5Hr1G069360.3 | Barley | cytosol | 32.66 | 31.64 |
| Bra013362.1-P | Field mustard | cytosol | 57.26 | 29.4 |
| CDX78906 | Canola | cytosol | 57.26 | 29.28 |
Protein Annotations
| EMBL:AK373484 | EnsemblPlants:HORVU3Hr1G071490.2 | EnsemblPlantsGene:HORVU3Hr1G071490 | InterPro:OBAP-like | PANTHER:PTHR31360 | PANTHER:PTHR31360:SF9 |
| PFAM:PF06884 | UniParc:UPI0002008558 | UniProt:F2EBF9 | MapMan:35.1 | : | : |
Description
Predicted protein [Source:UniProtKB/TrEMBL;Acc:F2EBF9]
Coordinates
chrchr3H:-:540665409..540666251
Molecular Weight (calculated)
27672.9 Da
IEP (calculated)
8.160
GRAVY (calculated)
-0.529
Length
248 amino acids
Sequence
(BLAST)
(BLAST)
001: MASSDEKPVP TPASTGGDGG PAGKPTTTST MLLDKGAAAL QSLRPVKQIK QHVCTFALYA HDPHRQVETH HFVSRLNQDV LQCPVYDSDD KHARLIGVEY
101: IVSRKIFESL PAEEQKLWHS HAHEIKTGLW ANPWVPSMLG KAELDHMAGT FGKFWCTWQV DRGDRLPLGA PALMVSPQAE RVGAVRPDLV RKRDQKYSFS
201: TEELKAARAD VEVPAEPRPG QADYWVRHHK GFAVDVVPHE MKRHAPFP
101: IVSRKIFESL PAEEQKLWHS HAHEIKTGLW ANPWVPSMLG KAELDHMAGT FGKFWCTWQV DRGDRLPLGA PALMVSPQAE RVGAVRPDLV RKRDQKYSFS
201: TEELKAARAD VEVPAEPRPG QADYWVRHHK GFAVDVVPHE MKRHAPFP
001: MASSDERPGA YPARDGSENL PPGDPKTMKT VVMDKGAAMM QSLKPIKQMS LHLCSFACYG HDPSRQIEVN FYVHRLNQDF LQCAVYDCDS SKPHLIGIEY
101: IVSERLFESL DPEEQKLWHS HDYEIQTGLL VTPRVPELVA KTELENIAKT YGKFWCTWQT DRGDKLPLGA PSLMMSPQDV NMGKIKPGLL KKRDDEYGIS
201: TESLKTSRVG IMGPEKKNSM ADYWVHHGKG LAVDIIETEM QKLAPFP
101: IVSERLFESL DPEEQKLWHS HDYEIQTGLL VTPRVPELVA KTELENIAKT YGKFWCTWQT DRGDKLPLGA PSLMMSPQDV NMGKIKPGLL KKRDDEYGIS
201: TESLKTSRVG IMGPEKKNSM ADYWVHHGKG LAVDIIETEM QKLAPFP
Arabidopsis Description
OBAP2AOil body-associated protein 2A [Source:UniProtKB/Swiss-Prot;Acc:Q941A4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.